| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3103 |
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| Symbol | |
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| ID | 6484628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3018101 |
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| End bp | 3019645 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642738415 |
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| Product | type III secretion outer membrane pore, YscC/HrcC family |
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| Protein accession | YP_002042139 |
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| Protein GI | 194445131 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.00000610588 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGCTAC AGCTAAAGGA GCCTGTCATT GTTAGCAAAA TGGCGGCACG AAAAAAAATT
ACGGGCAACT TTGAGTTTCA CGATCCTAAC GCATTACTGG AGAAGCTTTC CCTACAACTG
GGGCTGATTT GGTATTTCGA TGGGCAGGCT ATCTATATTT ATGACGCCAG TGAAATGCGC
AATGCCGTGG TTTCTTTACG CAACGTCTCA CTCAATGAGT TCAACAATTT TCTAAAACGC
TCAGGCTTAT ATAACAAAAA TTATCCGCTA CGTGGCGATA ACCGTAAAGG AACATTCTAT
GTTTCAGGGC CACCCGTTTA TGTTGATATG GTGGTCAACG CCGCCACCAT GATGGACAAG
CAAAACGATG GTATTGAGCT GGGACGCCAG AAAATAGGGG TGATGCGTCT GAATAATACC
TTCGTGGGCG ATCGTACCTA CAATCTGCGC GATCAGAAAA TGGTTATCCC CGGTATTGCC
ACGGCCATTG AAAGGTTATT GCAGGGAGAG GAACAACCCT TAGGTAATAT TGTCAGTAGC
GAACCCCCGG CGATGCCAGC GTTTTCAGCG AATGGAGAAA AAGGTAAAGC AGCAAATTAT
GCCGGTGGCA TGAGTCTGCA GGAAGCTTTA AAGCAAAATG CCGCGGCGGG CAATATTAAA
ATCGTGGCTT ATCCGGATAC CAACAGTTTG TTAGTAAAAG GAACGGCTGA GCAGGTGCAT
TTTATCGAAA TGCTGGTTAA AGCGCTGGAT GTCGCCAAAC GTCACGTAGA ATTATCCCTG
TGGATTGTCG ATCTTAATAA AAGCGATCTG GAGCGTTTGG GCACTTCATG GAGCGGCAGC
ATTACTATTG GGGACAAACT TGGCGTGTCA TTAAACCAGT CTTCAATAAG TACCCTCGAT
GGCAGTCGAT TCATCGCCGC GGTCAATGCG TTAGAAGAGA AGAAACAGGC GACGGTGGTT
TCGCGCCCGG TATTACTGAC TCAGGAAAAT GTTCCCGCTA TTTTTGATAA CAACAGAACG
TTTTACACCA AGCTGATTGG GGAACGTAAT GTGGCGCTTG AGCATGTAAC ATACGGAACA
ATGATCCGAG TGCTGCCCCG TTTTTCCGCA GATGGTCAGA TAGAAATGTC GCTGGACATT
GAAGATGGCA ACGATAAGAC GCCGCAATCT GATACTACCA CCTCCGTAGA TGCGTTACCC
GAAGTCGGGC GAACGTTAAT TAGCACTATT GCGAGAGTGC CGCACGGAAA AAGTTTGCTG
GTCGGGGGTT ATACACGGGA TGCAAATACC GATACTGTCC AAAGTATTCC GTTTTTAGGC
AAATTACCGC TTATTGGTAG CCTGTTCCGT TATTCCAGTA AGAATAAAAG TAATGTTGTT
CGTGTGTTCA TGATTGAACC AAAAGAAATT GTCGACCCGT TAACGCCGGA TGCCAGCGAA
TCGGTAAACA ATATTCTGAA GCAAAGCGGT GCCTGGAGTG GGGACGATAA GTTACAGAAA
TGGGTTCGTG TTTATCTGGA TAGAGGTCAG GAGGCAATTA AATGA
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| Protein sequence | MALQLKEPVI VSKMAARKKI TGNFEFHDPN ALLEKLSLQL GLIWYFDGQA IYIYDASEMR
NAVVSLRNVS LNEFNNFLKR SGLYNKNYPL RGDNRKGTFY VSGPPVYVDM VVNAATMMDK
QNDGIELGRQ KIGVMRLNNT FVGDRTYNLR DQKMVIPGIA TAIERLLQGE EQPLGNIVSS
EPPAMPAFSA NGEKGKAANY AGGMSLQEAL KQNAAAGNIK IVAYPDTNSL LVKGTAEQVH
FIEMLVKALD VAKRHVELSL WIVDLNKSDL ERLGTSWSGS ITIGDKLGVS LNQSSISTLD
GSRFIAAVNA LEEKKQATVV SRPVLLTQEN VPAIFDNNRT FYTKLIGERN VALEHVTYGT
MIRVLPRFSA DGQIEMSLDI EDGNDKTPQS DTTTSVDALP EVGRTLISTI ARVPHGKSLL
VGGYTRDANT DTVQSIPFLG KLPLIGSLFR YSSKNKSNVV RVFMIEPKEI VDPLTPDASE
SVNNILKQSG AWSGDDKLQK WVRVYLDRGQ EAIK
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