| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3095 |
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| Symbol | spaP |
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| ID | 6486441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3010175 |
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| End bp | 3010849 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 642738407 |
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| Product | surface presentation of antigens protein SpaP |
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| Protein accession | YP_002042131 |
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| Protein GI | 194445004 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.00000319202 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGGGAATG ATATCTCATT AATTGCCTTA CTGGCATTTT CCACCCTGTT GCCATTTATT
ATTGCGTCAG GAACCTGTTT CGTTAAATTT TCTATTGTAT TTGTCATGGT GCGTAACGCC
CTGGGATTGC AGCAGATACC TTCAAATATG ACGCTTAACG GCGTCGCATT GCTGCTTTCT
ATGTTTGTTA TGTGGCCCAT AATGCATGAT GCCTACGTCT ATTTTGAGGA CGAAGATGTC
ACCTTTAATG ATATTTCATC ATTAAGTAAA CACGTTGATG AAGGTCTGGA TGGTTATCGC
GATTATCTGA TCAAATATTC AGATCGCGAG TTAGTTCAGT TTTTTGAAAA CGCGCAACTG
AAGCGTCAGT ATGGAGAAGA GACCGAGACG GTAAAGCGTG ACAAAGATGA AATTGAAAAA
CCTTCAATAT TTGCGTTATT ACCTGCTTAT GCGCTGAGCG AAATAAAAAG CGCGTTTAAA
ATTGGTTTTT ATCTTTATTT GCCCTTTGTC GTCGTCGACC TGGTGGTATC CAGCGTGCTA
CTGGCGCTGG GGATGATGAT GATGAGTCCG GTGACGATAT CTACACCTAT TAAGCTGGTG
CTTTTTGTCG CGCTTGATGG CTGGACCTTA CTGTCTAAGG GATTGATATT ACAGTATATG
GACATTGCAA CATGA
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| Protein sequence | MGNDISLIAL LAFSTLLPFI IASGTCFVKF SIVFVMVRNA LGLQQIPSNM TLNGVALLLS
MFVMWPIMHD AYVYFEDEDV TFNDISSLSK HVDEGLDGYR DYLIKYSDRE LVQFFENAQL
KRQYGEETET VKRDKDEIEK PSIFALLPAY ALSEIKSAFK IGFYLYLPFV VVDLVVSSVL
LALGMMMMSP VTISTPIKLV LFVALDGWTL LSKGLILQYM DIAT
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