Gene SNSL254_A3081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3081 
Symbol 
ID6482526 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp2996360 
End bp2998021 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content43% 
IMG OID642738395 
Productinvasion protein regulator 
Protein accessionYP_002042119 
Protein GI194443739 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.0000362191 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCACATT TTAATCCTGT TCCTGTATCG AATAAAAAAT TCGTCTTTGA TGATTTCATA 
CTCAACATGG ACGGCTCCCT GCTACGCTCA GAAAAGAAAG TCAATATTCC GCCAAAAGAA 
TATGCCGTTC TGGTCATCCT GCTCGAAGCC GCCGGCGAGA TTGTGAGTAA AAACACCTTA 
CTGGACCAGG TATGGGGCGA CGCGGAAGTT AACGAAGAAT CTCTTACCCG CTGTATTTAT 
GCCTTACGAC GTATTCTGTC GGAAGATAAA GAGCATCGTT ACATTGAAAC ACTGTACGGA 
CAGGGCTATC GGTTTAATCG TCCGGTCGTA GTGGTGTCTC CGCCAGCGCC GCAACCTACG 
ACTCATACAT TGGCGATACT TCCTTTTCAG ATGCAGGATC AGGTTCAATC CGAGAGTCTG 
CATTACTCTA TCGTGAAGGG ATTATCGCAG TATGCGCCCT TTGGCCTGAG CGTGCTGCCG 
GTGACCATTA CGAAGAACTG CCGCAGTGTT AAGGATATTC TTGAGCTCAT GGATCAATTA 
CGCCCCGATT ATTATATCTC CGGGCAGATG ATACCCGATG GCAATGATAA TATTGTACAG 
ATCGAGATAG TTCGGGTTAA AGGTTATCAC CTGCTGCACC AGGAAAGCAT TAAGTTGATA 
GAACACCAAC CCGCTTCTCT CTTGCAAAAC AAAATTGCGA ATCTTTTGCT CAGATGTATT 
CCCGGACTTC GCTGGGACAC AAAGCAGATT AGCGAGCTAA ATTCGATTGA CAGTACTATG 
GTTTACTTAC GCGGTAAGCA TGAGTTAAAT CAATATACCC CCTATAGCTT ACAGCAAGCG 
CTTAAATTGC TGACTCAATG CGTTAACATG TCGCCAAACA GCATTGCGCC TTACTGTGCG 
CTGGCAGAAT GCTACCTCAG CATGGCGCAA ATGGGGATTT TTGATAAACA AAACGCCATG 
ATCAAAGCTA AAGAACATGC GATTAAGGCG ACAGAGCTGG ACCACAATAA TCCACAAGCT 
TTAGGATTAC TGGGACTAAT TAATACGATT CATTCAGAAT ACATCGTCGG GAGTTTGCTA 
TTCAAACAAG CTAACTTACT TTCGCCCATT TCTGCAGATA TTAAATATTA TTATGGCTGG 
AATCTCTTCA TGGCTGGTCA GTTGGAGGAG GCCTTACAAA CGATTAACGA GTGTTTAAAA 
TTGGACCCAA CGCGCGCAGC CGCAGGGATC ACTAAGCTGT GGATTACCTA TTATCATACC 
GGTATTGATG ATGCTATACG TTTAGGCGAT GAATTACGCT CACAACACCT GCAGGATAAT 
CCAATATTAT TAAGTATGCA GGTTATGTTT CTTTCGCTTA AAGGTAAACA TGAACTGGCA 
CGAAAATTAA CTAAAGAAAT ATCCACGCAG GAAATAACAG GACTTATTGC TGTTAATCTT 
CTTTACGCTG AATATTGTCA GAATAGTGAG CGTGCCTTAC CGACGATAAG AGAATTTCTG 
GAAAGTGAAC AGCGTATAGA TAATAATCCG GGATTATTAC CGTTAGTGCT GGTTGCCCAC 
GGCGAAGCTA TTGCCGAGAA AATGTGGAAT AAATTTAAAA ACGAAGACAA TATTTGGTTC 
AAAAGATGGA AACAGGATCC CCGCTTGATT AAATTACGGT AA
 
Protein sequence
MPHFNPVPVS NKKFVFDDFI LNMDGSLLRS EKKVNIPPKE YAVLVILLEA AGEIVSKNTL 
LDQVWGDAEV NEESLTRCIY ALRRILSEDK EHRYIETLYG QGYRFNRPVV VVSPPAPQPT 
THTLAILPFQ MQDQVQSESL HYSIVKGLSQ YAPFGLSVLP VTITKNCRSV KDILELMDQL 
RPDYYISGQM IPDGNDNIVQ IEIVRVKGYH LLHQESIKLI EHQPASLLQN KIANLLLRCI 
PGLRWDTKQI SELNSIDSTM VYLRGKHELN QYTPYSLQQA LKLLTQCVNM SPNSIAPYCA 
LAECYLSMAQ MGIFDKQNAM IKAKEHAIKA TELDHNNPQA LGLLGLINTI HSEYIVGSLL 
FKQANLLSPI SADIKYYYGW NLFMAGQLEE ALQTINECLK LDPTRAAAGI TKLWITYYHT 
GIDDAIRLGD ELRSQHLQDN PILLSMQVMF LSLKGKHELA RKLTKEISTQ EITGLIAVNL 
LYAEYCQNSE RALPTIREFL ESEQRIDNNP GLLPLVLVAH GEAIAEKMWN KFKNEDNIWF 
KRWKQDPRLI KLR