Gene SNSL254_A2991 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A2991 
Symbol 
ID6484868 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp2921093 
End bp2921770 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content57% 
IMG OID642738307 
ProductDNA-binding transcriptional regulator CsiR 
Protein accessionYP_002042036 
Protein GI194445931 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.0247222 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCCC TTTCCCAACC GACGGCCATA GATGGCTATC GCTGGCTTAA AAATGACATT 
ATTCGCGGCA CTTATCAGCC GGATGAGAAA CTGCGGATGA GTTTATTAAC CGCCCGCTAT 
GCGCTCGGCG TAGGGCCGCT GCGCGAGGCG CTGTCACAAC TGGTGGCGGA ACGGCTGGTC 
ACCGTGGTGA ATCAAAAAGG CTATCGCGTG GCATCCATGT CAGAGGCGGA ACTCCTCGAT 
ATTTTTGACG CGCGCGCCAA TATGGAAGCG ATGCTGGTGC GCCTGGCGAT TGAACGCGGC 
GATGATGCGT GGGAGGCGGA GATCCTGGCG CGAGCGCATA TGCTCAGTAA ACTGGAAGCC 
AGCGATGCCA GTGAACATAT GCTCGATGAA TGGGATCAGC GCCACCAGGC GTTCCATTCC 
GCCATTGTCG CCGGGTGCGG CTCCCACTAT CTGCTACAGA TGCGCGAACG CTTATTTGAC 
CTGGCGGCCC GCTACCGCTT TATTTGGTTA CGTGAAACCG TTCTGTCCGT CGAGATGCTG 
GAAGATAAAC ATATCCAGCA TCACACGCTA ACCGAAGCGA TACTGGCGCG CGAGGCGGCA 
CGCGCCAGCG AATTAATGCG TCAGCATTTG CTGACGCCGA TTCCCATTAT TCGCCAGGCG 
ATGGCAGGGA AAATGTAG
 
Protein sequence
MTALSQPTAI DGYRWLKNDI IRGTYQPDEK LRMSLLTARY ALGVGPLREA LSQLVAERLV 
TVVNQKGYRV ASMSEAELLD IFDARANMEA MLVRLAIERG DDAWEAEILA RAHMLSKLEA 
SDASEHMLDE WDQRHQAFHS AIVAGCGSHY LLQMRERLFD LAARYRFIWL RETVLSVEML 
EDKHIQHHTL TEAILAREAA RASELMRQHL LTPIPIIRQA MAGKM