Gene SNSL254_A2974 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A2974 
Symbol 
ID6486179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp2903442 
End bp2904542 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content44% 
IMG OID642738290 
Producteffector protein pipB2 
Protein accessionYP_002042019 
Protein GI194444294 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value0.16662 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAATT TTATCATGCA CTGTGTTGCT GTCTCTGGGA GAAAATATAT GGAGCGTTCA 
CTCGATAGTC TGGCTGGTAT GGCTAAATCT GCTTTTGGCG CGGGGACTTC TGCTGCTATG 
CGGCAAGCTA CCTCGCCCAA AACCATTCTG GAATATATCA TTAACTTTTT TACCTGTGGT 
GGGATACGTC GGAGAAATGA AACACAATAT CAGGAATTGA TAGAGACTAT GGCTGAGACA 
TTGAAAAGTA CAATGCCTGA CAGAGGTGCT CCGTTGCCAG AAAACATCAT CCTGGATGAT 
ATGGATGGGT GTCGTGTCGA ATTTAATCTT CCTGGTGAGA ATAACGAAGC TGGACAAGTT 
ATTGTACGAG TCAGTAAAGG CGACCATTCT GAGACAAGAG AAATTCCGCT TGCCTCTTTT 
GAAAAAATAT GCCGAGCTTT ACTATTCAGA TGCGAATTTT CTCTCCCTCA GGATTCTGTA 
ATATTAACTG CCCAGGGAGG CATGAATCTT AAAGGCGCTG TCCTTACCGG AGCAAATCTG 
ACGTCAGAAA ATTTATGTGA CGCAGACTTA AGCGGCGCAA ATTTAGAGGG GGCAGTGCTG 
TTTATGGCGG ATTGTGAAGG TGCAAATTTT AAGGGCGCAA ATCTATCGGG AACATCACTA 
GGCGACAGTA ATTTCAAGAA CGCCTGTCTG GAAGATAGCA TTATGTGTGG CGCTACCCTC 
GATCACGCTA ATCTTACTGG CGCCAATTTA CAACACGCGA GTCTGTTAGG CTGTAGCATG 
ATAGAATGTA ATTGCTCCGG TGCAAATATG GATCACGCTA ATGTTTCAGG CGCAACCCTT 
ATACGTGCCG ATATGAGCGG TGCGACATTA CAGGGTGCTA CTATAATGGC TGCTGATATG 
GAAGGCGCTA TCTTAACCCG GGCAAACCTG CAAAAGGCGA GTTTCATTTC TACGAACCTG 
GGCGAGGCTG ATTTGTCCGA AGCTAATTTA AAAAATACCA GTTTTAAAGA TTGTACACTA 
ACCGATTTGC GTACTGAAGA CGCCACAATG TCTACGAGTA CACAAACACT CTTTAACGTA 
TTTTATAGTG AAAATATTTA G
 
Protein sequence
MINFIMHCVA VSGRKYMERS LDSLAGMAKS AFGAGTSAAM RQATSPKTIL EYIINFFTCG 
GIRRRNETQY QELIETMAET LKSTMPDRGA PLPENIILDD MDGCRVEFNL PGENNEAGQV 
IVRVSKGDHS ETREIPLASF EKICRALLFR CEFSLPQDSV ILTAQGGMNL KGAVLTGANL 
TSENLCDADL SGANLEGAVL FMADCEGANF KGANLSGTSL GDSNFKNACL EDSIMCGATL 
DHANLTGANL QHASLLGCSM IECNCSGANM DHANVSGATL IRADMSGATL QGATIMAADM 
EGAILTRANL QKASFISTNL GEADLSEANL KNTSFKDCTL TDLRTEDATM STSTQTLFNV 
FYSENI