Gene SNSL254_A2886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A2886 
Symbol 
ID6483224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp2816021 
End bp2817241 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content50% 
IMG OID642738206 
Producthypothetical protein 
Protein accessionYP_002041935 
Protein GI194443826 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.153308 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones73 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAGG AATTTTCTCT GTCCAGACCA ACATTTAAAC GCACACTACG GCGGATTAGT 
ATAATCAGCG TGCTGCTTAC AATGACATTG ATCTGGCTAT TAATTTGCGT TGCGTCTGTC
CTTACGCTCA AACAGTATGC GCAAAAAAAT CTCGATTTGA CCGCCGCCAC AATGGCCCAT
AGCCTTGAAG CGGCACTGGT ATTTTCCGAT AACGCGGCCG CAGCGGAAAC GCTCGCCACA
CTGGGACGCC AGGGACAATT TTCAGCGGCG GAGGTCCGCG ATAAAAATGG CCGTACTATC
GCCTCATGGC GCTATGATGC GCGAGCCGCA GACGATAAGC TCATCGGCTT AATTAGCCAC
TGGCTTTTTC CATTGCCGGT ATCGCAACCC GTCTGGCACA ACGGCAGGGC CATCGGCGAA
GTACGGCTTG TCGCCCGCGA CAGCCTTATT GGTCATTTTA TCTGGCTATC GCTGGCAGTG
CTGACAGGAT GTATTCTGCT GGCATCCGGC ATTGCCCTGC TGCTCACGCG TTATTTGCAC
AATGGCGTTG TGGATGCGCT GCAAAATATT ACTGAAGTTG TACACGACGT TCGCACTAAC
CGAAATTTTT CACGCCGGGT ACCTGATGAG CGTATTGCGG AATTTCACCT GTTTGCGCAG
GATTTCAATA GCCTTCTGGA TGAGATGGAA GAATGGCAGC TACGGCTTCA GGCTAAAAAT
GCCCAGTTAC TACGTACCGC GTTGCACGAT CCGCTGACGG GGCTTGCCAA TCGCGCGGCA
TTTCGCAGCT GTATTAACGC GCTGATGAAG GACAATTCCG CTCGTAGCAG TTCGGCATTG
TTATTTCTGG ATGGCGATAA CTTTAAATAT ATTAATGATA CCTGGGGACA TGCGGCAGGC
GACCGCGTAC TTATAGAGGT TGCCAAAAGA TTAGCGGAAT TCGGTGGTAG CCGTTATCAG
ACTTACCGAC TCGGCGGCGA TGAATTTGCG ATGGTGCTTT ACGATGTACA TTCGGAATAT
GAAGTACAAC GTATTTGCGC AGCGCTATCC CAGGCATTTA ATCGACCTTT TGAATTGCAT
AACGGCCAGC GGATAACGAT GACCCTGAGT ATTGGCTTTG CGCTGACATG GGAACATGCC
ACTGCCGAAA AACTACAAGA ACTGGCCGAT CGAAATATGT ATCAGGCTAA ACACCGGCGT
GCGGAGCGCT CGCTAAACTA A
 
Protein sequence
MNKEFSLSRP TFKRTLRRIS IISVLLTMTL IWLLICVASV LTLKQYAQKN LDLTAATMAH 
SLEAALVFSD NAAAAETLAT LGRQGQFSAA EVRDKNGRTI ASWRYDARAA DDKLIGLISH
WLFPLPVSQP VWHNGRAIGE VRLVARDSLI GHFIWLSLAV LTGCILLASG IALLLTRYLH
NGVVDALQNI TEVVHDVRTN RNFSRRVPDE RIAEFHLFAQ DFNSLLDEME EWQLRLQAKN
AQLLRTALHD PLTGLANRAA FRSCINALMK DNSARSSSAL LFLDGDNFKY INDTWGHAAG
DRVLIEVAKR LAEFGGSRYQ TYRLGGDEFA MVLYDVHSEY EVQRICAALS QAFNRPFELH
NGQRITMTLS IGFALTWEHA TAEKLQELAD RNMYQAKHRR AERSLN