| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2855 |
|---|
| Symbol | |
|---|
| ID | 6486042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 2785234 |
|---|
| End bp | 2786568 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642738177 |
|---|
| Product | ATP-dependent RNA helicase SrmB |
|---|
| Protein accession | YP_002041910 |
|---|
| Protein GI | 194444674 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0723995 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 0.849039 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTAA CGACTTTTTC CGAACTTGAA CTCGACGAAA GCCTGCTGGA TGCCCTCCAG
GATAAAGGTT TCACTCGCCC GACCGCCATT CAGGCTGCCG CCATTCCGCC TGCGCTCGAT
GGCCGTGATG TACTCGGTTC TGCGCCGACA GGCACCGGTA AAACGGCGGC ATATCTGCTG
CCGGCGTTGC AGCACCTGCT CGACTTTCCG CGTAAAAAAT CGGGGCCGCC GCGCATTCTG
ATCCTGACGC CAACCCGCGA ACTGGCTATG CAGGTTGCCG ATCACGCTCG TGAACTGGCT
AAGCATACTC ACCTGGATAT CGCCACGATT ACCGGCGGCG TGGCCTATAT GAACCATGCT
GAAGTGTTTA GCGAAAACCA GGATATCGTG GTCGCCACGA CGGGCCGTCT GCTGCAATAT
ATAAAAGAAG AGAACTTTGA CTGCCGGGCG GTTGAAACAC TGATCCTTGA CGAAGCTGAC
CGGATGCTCG ACATGGGCTT CGCTCAGGAC ATTGAACATA TCGCTGGTGA GACCCGCTGG
CGTAAACAAA CGATGCTGTT CTCCGCCACG CTGGAAGGCG ATGCGATTAA AGATTTTGCC
GAGCGCCTGC TGGAAGACCC GGTTGAGGTT TCTGCCAATC CGTCAACCCG CGAGCGTAAG
AAAATTCACC AGTGGTACTA CCGTGCCGAC AATTTCGAAC ATAAAGTTGC GCTGTTGAAG
CACCTGCTAA AACAAGACGA TGCAACCCGT TCTATCGTGT TTGTACGTAA ACGTGAACGC
GTCCATGAAC TGGCTGAAAC GCTGCGTCTG GCAGGGATCA ACAATTGCTA TCTTGAAGGT
GAGATGGCGC AGATCAAACG TAACGAAGGT ATTAAGCGTC TCACCGACGG TCGCGTTAAC
GTCCTGGTCG CGACCGACGT CGCGGCACGC GGGATTGATA TTCCTGACGT CAGCCACGTC
ATTAACTTCG ACATGCCGCG CAGTGGCGAT ACCTATCTGC ATCGCATTGG TCGTACAGGC
CGTGCGGGTC GCAAAGGCAC TGCAATCTCG CTGGTAGAAG CCCACGACCA TCTGTTGCTG
CTGAAAATCG GTCGCTACAT CGAAGAGCCG CTAAAAGCGC GCGTCATTGA TGAGCTTCGC
CCGACCACGC GTGCGCCCAG CGAAAAGCTG ACCGGCAAAC CGTCGAAAAA AGTGCTGGCG
AAGCGCGCCG AGAAGAAAAA AGAGAAAGAA AAAGAGAAGC CGCGCGTGAA GAAACGTCAC
CGCGATACAA AAAATATCGG TAAGCGCCGC AAGCCAAGCG GTACGAAGAT GCAGGAGCAA
TCCAGCGAAG AGTGA
|
|---|
| Protein sequence | MTVTTFSELE LDESLLDALQ DKGFTRPTAI QAAAIPPALD GRDVLGSAPT GTGKTAAYLL
PALQHLLDFP RKKSGPPRIL ILTPTRELAM QVADHARELA KHTHLDIATI TGGVAYMNHA
EVFSENQDIV VATTGRLLQY IKEENFDCRA VETLILDEAD RMLDMGFAQD IEHIAGETRW
RKQTMLFSAT LEGDAIKDFA ERLLEDPVEV SANPSTRERK KIHQWYYRAD NFEHKVALLK
HLLKQDDATR SIVFVRKRER VHELAETLRL AGINNCYLEG EMAQIKRNEG IKRLTDGRVN
VLVATDVAAR GIDIPDVSHV INFDMPRSGD TYLHRIGRTG RAGRKGTAIS LVEAHDHLLL
LKIGRYIEEP LKARVIDELR PTTRAPSEKL TGKPSKKVLA KRAEKKKEKE KEKPRVKKRH
RDTKNIGKRR KPSGTKMQEQ SSEE
|
|---|
| |