| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2801 |
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| Symbol | |
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| ID | 6486507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 2743218 |
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| End bp | 2746313 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642738124 |
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| Product | gifsy-1 prophage VmtH |
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| Protein accession | YP_002041858 |
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| Protein GI | 194443589 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5281] Phage-related minor tail protein |
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| TIGRFAM ID | [TIGR01541] phage tail tape measure protein, lambda family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 0.617877 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCAGA TAGCGAACCT GGTCATTGAT TTAAGTATCG ACAGCGCAGA GTTCCGAAAC
GAAGTTCCGC GCATTAAAAA ATTGCTGAAC GATGCGGCTG GTGACTCAGA ACGTTCAGCG
GCCCGGATGC AGCGTTTTCT GGATAAGCAG ACGGAGGCGA CGCGCCGGAC GTCCGCCAGT
CTGGAGCAAG TGACTGCCAG CAGTACCGCG TACAGTTCCG CTGTGGAGAA AAGCGCAGCG
GCCAGTACGC GTCTGGCGGC GGATGTGGAT CAGACGCGAC AGCGGGTGGA GGCACTGGGA
AGGAAACTGC GTGAGGAACA GGCGCAGTCA GCGGCTGTGG CGGCAGCACA GGACAGGACA
AGTGCTGCTT TTTACCGCCA GATTGACAGT GTAAAACAGT TAAGCGGTGG TCTGCAGGAG
CTGCAGCGTA TCCAGGCGCA GGTACGACAG GCGAAAGGAC GCGGAGATAT CTCACAGGGC
GATTATCTGG CGCTGGTGTC TGAAACCGCC AGGAAGACCC GTGAGCTTAC CGATGCCGAA
GCGCTGGCCA CGCAGAAAAA AGCACAGTTT ATACGCCGCC TGAAAGAGCA GACGACGGTA
CAGGGCCTCT CCCGTACCGA GCTGCTGCGG GTGAAGGCGG CTGAACTGGG TGTCAGTAGC
GCCGCAGATA TTTATATCCG TAAACTGGAG CGTACCGGAA CTGCCACCCA TACGCTAGGA
CTGAAAAGCG CTGCTGCCCG TCGTGAACTG GGCGTGCTGG CTGGTGAGCT GGCCCGTGGG
AATTTCGGGG CACTGCGGGG AAGTGGTATC ACGCTCGCTA ACCGCGCCGG GTGGATCGAG
CAACTGATGT CTCCGAAGGG CATGATGCTC GGCGGGCTGG CTGGCGGCGT GGCTGCTGCT
GTTTACGGGC TGGGCAAGGC CTACTATGAA GGCGCTAAGG AAAGCGAGAC GTTCAATAAA
CAGCTTATTC TGACCGGGAG TTATGCCGGA AAAACCACAG GCCAGCTTAA TGCGATGGCG
AAGTCGCTCG CCGGAAATGG CGTCACGCAG CACGATGCTG CAGGCGTGCT GGCACAGGTG
GTCGGTAGCG GAGCGTTTAC CGGGCAGGCA ATGGCAATGG TATCCCGTAC CGCGACCAGA
ATGCAGGAAA ACGTGGGACA ATCAGTGGAT GAAACCATCC GCCAGTTTAA ACGCCTGCGG
GATGATCCGG TGAATGCGGC GAAAGAACTG GACAGGACAC TGCATTTTCT GACAGCCACC
CAGCTTGAAC AAATCAGGGT ACTGGGCGAG CAGGGAAGAG TGGCTGATGC CGCGAAAATT
GCCATGTCCG CGTATTCGGA AGAAATGAAT AAGCGGATGG GGGACGTACA CGACAATCTG
GGCTGGATTG AAAGAGCATG GAATGCTGTC GGTGATGCGG CGAAGTGGGC ATGGGATCGG
ATGCTGGATA TCGGGCGGGA AGACACGCTC GATGAAAAGA TCGCGACACT GCAGGAAAAA
ATCGCGCGCG ACAGAAAAAC GCCCTGGACG GTGTCTTCTT CCCAGACTGA ATACGATCAG
CAGCAGCTGA ACGAACTTCA GGAACAGAAA CGCCAGAAGG ACCTGCTGGA TGCGAAGGCG
CAGGCAGAGC GTAATTATCA GGAAACGCAG AAACGTCGGA ACGAGCAGAA CGCCGCGCTG
AACCGGGATA ATGAAACTGA ATCCCTGCGG CACCAACGGG AGGTGGCGCG CATTACCGCC
ATGCAGTATG CCGATGCTGC TGTACGCAAT GCCGCACTGG AGCGCGAAAA TGAACGTCAT
AAAAAGGCGT TGTCACAACA GGCGAAAAAG CCAAAGACTT ACCACAACGA CGAGGCCAGG
CGACTGCTTT TGCAGTACAG CCAGCAACAG GCGCAGACTG AAGGGCAGAT TACCGCCGCG
AAGCTTTCCA CGACCGAAAA AATGACGGAA GCGCATAAGC AGCTTTTGTC ATTTCAGCAG
CGCATCGCTG ATTTGTCCGG TAAAAAACTG ACGGCGGATG AACAAAGCGT ACTGGCACAT
AAGGATGAAA TTGCGCTTGC GCTACAGAAG CTGGATATCT CACAACAGGA TTTGCAACAC
CAGAATGCCC TTAATGAACT GAAGAAAAAG ACGCTCACAT TGACCAGCCA GCTCGCTGAC
GAAGAATCCC GCGTCAGGCA ACAGCACGCA ATGGCGCTGG CCACAATGGG TATGGGCGAT
CAGCAACGTG GCCGATACGA AGAGCGTCTG AAAATTCAGC AGCACTACCA GGAACAACTG
GAGCAGCTTA AACGCGACAG CAAGGCAAAA GGGACATACG GTTCTGACGA ATATCGTCAG
GCGGAGCAGG CGCTGAAGGG CAGTCTCGAT CGCCGGCTGG CTGAGTGGGC GGATTACAAT
GCGAAAGTTG ACGCTGCGCA GGGAGACTGG ACGCTGGGGG CGTCGCGGGC GCTGGATAAC
TTTCTGGCGC AGGGCGGCAA TGTGGCAGGC ATGACGGAGA ACGTTTTCAC AAACGCATTT
AACGGCATGG CGGACAGTAT CGCGAATTTT GCCGTGACCG GAAAGGGCAG TTTCCGGAGC
CTGACGGTCT CCATCCTGGC TGACCTTGCA AAAATGGAGG CACGTATTGC GGCTTCTAAA
CTGTTGGGTT CAGTGCTGGC AATGTTCGGC TTTGGCACAT CGGCAGGCGG CAGTACACCA
TCAGGGGCAT ACAGTTCTGC GGCGCTGTCG GTTATTCCGA ATGCGGACGG CGGCGTGTAC
CGTTCGGCAG GACTCAGCCA GTACAGCGGC AGCATTGTTA ATCGCCCGAC ATTTTTTGCT
TTTGCCAAAG GTGCCGGGGT GATGGGCGAG GCAGGACCGG AGGCAATATT ACCACTTCGT
CGTGGTGCTG ACGGTAAGCT GGGTGTCGTG GCAGCCGGTT CAGGAGGGAT GGCGATGTTT
GCGCCTGAGT ACAACATTGA AATCCACAAC GACGCCGGCA ACGGACAGAT TGGTCCGCAG
GCATTACAGG CCGTATATAA CATTGGAAAA AAAGCCGCCA TTGATTTCTG GCAACAGCAG
TCGCGTGACG GGGGTATTGC TGGAGGAGGG CGATAA
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| Protein sequence | MDQIANLVID LSIDSAEFRN EVPRIKKLLN DAAGDSERSA ARMQRFLDKQ TEATRRTSAS
LEQVTASSTA YSSAVEKSAA ASTRLAADVD QTRQRVEALG RKLREEQAQS AAVAAAQDRT
SAAFYRQIDS VKQLSGGLQE LQRIQAQVRQ AKGRGDISQG DYLALVSETA RKTRELTDAE
ALATQKKAQF IRRLKEQTTV QGLSRTELLR VKAAELGVSS AADIYIRKLE RTGTATHTLG
LKSAAARREL GVLAGELARG NFGALRGSGI TLANRAGWIE QLMSPKGMML GGLAGGVAAA
VYGLGKAYYE GAKESETFNK QLILTGSYAG KTTGQLNAMA KSLAGNGVTQ HDAAGVLAQV
VGSGAFTGQA MAMVSRTATR MQENVGQSVD ETIRQFKRLR DDPVNAAKEL DRTLHFLTAT
QLEQIRVLGE QGRVADAAKI AMSAYSEEMN KRMGDVHDNL GWIERAWNAV GDAAKWAWDR
MLDIGREDTL DEKIATLQEK IARDRKTPWT VSSSQTEYDQ QQLNELQEQK RQKDLLDAKA
QAERNYQETQ KRRNEQNAAL NRDNETESLR HQREVARITA MQYADAAVRN AALERENERH
KKALSQQAKK PKTYHNDEAR RLLLQYSQQQ AQTEGQITAA KLSTTEKMTE AHKQLLSFQQ
RIADLSGKKL TADEQSVLAH KDEIALALQK LDISQQDLQH QNALNELKKK TLTLTSQLAD
EESRVRQQHA MALATMGMGD QQRGRYEERL KIQQHYQEQL EQLKRDSKAK GTYGSDEYRQ
AEQALKGSLD RRLAEWADYN AKVDAAQGDW TLGASRALDN FLAQGGNVAG MTENVFTNAF
NGMADSIANF AVTGKGSFRS LTVSILADLA KMEARIAASK LLGSVLAMFG FGTSAGGSTP
SGAYSSAALS VIPNADGGVY RSAGLSQYSG SIVNRPTFFA FAKGAGVMGE AGPEAILPLR
RGADGKLGVV AAGSGGMAMF APEYNIEIHN DAGNGQIGPQ ALQAVYNIGK KAAIDFWQQQ
SRDGGIAGGG R
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