Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A2549 |
Symbol | |
ID | 6485880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 2471843 |
End bp | 2473270 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642737884 |
Product | putative regulatory protein |
Protein accession | YP_002041625 |
Protein GI | 194446403 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.996004 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 80 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCATCCA CCAATCAGGA ACTGGCCTCG GCGCTCAGGA TGTTTTCCCG CTTTTTCGAT TTGATTCATC AGCCGTTGGC CGTCATTAAT GAGCGTGGTG AATACGTTTA CTACAATCAG GAAAGCGCGG ATCTGGACGG CTACAGCATT GAACGGGCAA TGGGAAAACA TATGCTGGAT GTCTATCCGG GCATGAAAGA GACGCAAAGT ACGATGCTTT CATCGTTAAA AAAAGGCGTG GAATACATTG GCCATTATCA AATTTATTAC AATGCGCGAG GCCAGGCCGT TGACTATCAG CACACCACCG CACCGCTCTA TGCAAGCGAT GGCGGCATGG TCGGCGTTAT CGAAATCGGC AGGAATATGT CCGGCGTCAG GCGGCTCCAG GAGCAGGTGG TAGAACTGAA CCAACTGCTG TATGCCGATC GCCATGAGAA GCACCATGCC ATTATTACCG AAAACCCGGA AATGCTCAGT AATATCGCCA AAGCCAAACG GCTGGCCGCC AGTAATATTC CGGTGACGAT TGTCGGGGAG ACGGGTACGG GTAAGGAGCT ATTTTCCCGC CTGATACATC AATGCAGCAA GCGGGCGAAT AAGCCATTTA TCGCCCTGAA CTGCGGCGCT CTACCGCCTA CGCTTATCGA AAGTACGCTT TTCGGCACCG TGCGCGGCGC CTATACCGGC GCGGAAAATA GCCAGGGCTA TCTGGAGTTG GCAAACGGGG GAACGCTCTT TCTTGATGAG CTGAACGCCA TGCCGATAGA AATGCAAAGT AAGCTGCTGC GATTCTTGCA GGATAAAACC TTCTGGCGGC TCGGCGGACA ACAGCAACTC CACTCTGATG TCAGGATCGT TGCCGCCATG AACGAAGCGC CCGTCAAATT AATTCAACAA GAACGCCTGC GGGCGGATCT TTTTTATCGG TTGAGCGTCG GAATGTTGAC GTTACCGCCG CTGCGCGCCC GCCCGGAAGA TATTCCCTTA CTGGCAAATT ATTTTATTGA TAAATACCGT AATGATGTGC CGCAGGACAT TCACGGACTA AGCGAGACGG CGCGTGCTGA TCTGCTCAAT CACGCCTGGC CGGGTAATGT CAGGATGCTG GAAAACGCGA TTGTACGCAG CATGATCATG CAGGAAAAAG ACGGGCTGCT GAAACACATC ATTTTTGAAC AGGACGAGTT AAATTTAGGC GTACCGGAAA CCGCGCCGGA AAATCCCCTT CCCTCGTCAC CCGATCCGCA GTATGAAGGG TCGCTGGAGG CACGGGTTGC CAACTACGAA AGGCATTTAA TAGAAACCGC GCTGGATACG CATCAGGGGA ATATTGCCGC CGCGGCCCGC AGCCTTAACG TATCGCGCAC CACGTTACAG TACAAAGTAC AAAAATACGC TATTCGCTTC GGCGTGGTGC GTAATTGA
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Protein sequence | MASTNQELAS ALRMFSRFFD LIHQPLAVIN ERGEYVYYNQ ESADLDGYSI ERAMGKHMLD VYPGMKETQS TMLSSLKKGV EYIGHYQIYY NARGQAVDYQ HTTAPLYASD GGMVGVIEIG RNMSGVRRLQ EQVVELNQLL YADRHEKHHA IITENPEMLS NIAKAKRLAA SNIPVTIVGE TGTGKELFSR LIHQCSKRAN KPFIALNCGA LPPTLIESTL FGTVRGAYTG AENSQGYLEL ANGGTLFLDE LNAMPIEMQS KLLRFLQDKT FWRLGGQQQL HSDVRIVAAM NEAPVKLIQQ ERLRADLFYR LSVGMLTLPP LRARPEDIPL LANYFIDKYR NDVPQDIHGL SETARADLLN HAWPGNVRML ENAIVRSMIM QEKDGLLKHI IFEQDELNLG VPETAPENPL PSSPDPQYEG SLEARVANYE RHLIETALDT HQGNIAAAAR SLNVSRTTLQ YKVQKYAIRF GVVRN
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