Gene SNSL254_A2532 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A2532 
Symbol 
ID6485298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp2456355 
End bp2457374 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content56% 
IMG OID642737867 
Productregulatory protein LacI 
Protein accessionYP_002041608 
Protein GI194446298 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.000782383 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value0.6775 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATAC CCCGTAAACG GCGCAGTACC GGTAAAGTGA CTATCGCCGA TGTAGCCCAA 
CTTGCCGGTG TAGGCACGAT GACCGTATCA CGAGCCTTAC GCACGCCGGA ACAGGTCTCT 
GATAAACTCC GGGAAAAAAT CGAAGCGGCA GTGCATGAGC TGGGCTATAT GCCTAATCTC 
GCCGCCAGCG CGCTGGCGTC TGCCTCCTCG CACACCATCG CGATGGTCGT ACCGAACCTT 
GCGGAAGCGG GGTGTTCTGA AATGTTCGCC GGGCTGCAAC AAATTTTACA GCCCGCAGGC 
TACCAGATTA TGCTGGCGGA ATCGCAGCAT CGCGTGGAAC AAGAGGAGAA GCTGCTCGAA 
ACGCTGCTGG CCTCCAACAT TGCCGCGGCG ATTCTGCTTA GCGTCGAACA TAGCACTACC 
GTGCGCCAGT GGCTGAAAAA TGCCTCTATC CCGGTGATGG AGATGGGCGC GATTCGCAGC 
GATCCTATTG ATATGAATAT CGGTATTGAT AACGTTGCGG CAATGTATGA GCTGACGGAA 
ATGCTGATTC AGCGCGGTTA TCAGAATATC GGGCTACTAT GCGCCAATCA GGAGCAGTGG 
ATTTTTCAGC AACATCTGCA CGGCTGGTAC AAAGCGATGC TTCGCCACCA TATGTCGCCA 
AACCGGGTGA TTAATGCCGC CTTGCCACCC AATTTTTCTA CCGGCGCGTC GCAACTGCCG 
GAGTTTTTAC TGGCGTGGCC GGAGCTGGAC GCGCTGGTAT GCGTATCGGA TGAGCTGGCC 
TGCGGCGCGT TATACGAGTG CCAACGACGG CGGATCAAAG TTCCGGACGA TTTAGCGGTG 
GTCGGGTTTG GCGATAGCGA TGTCAGCCGG GTCTGCCAGC CGCCGTTAAC CACCATGGCC 
GTACCGCACC GTAAGATTGG CAGTGAAGCC GGACGGGCGC TGTTGGAAAG GTTAAATCAG 
GGAAACTGGA GCGATCGGAA ATCCATCGCC TCCAGTTTAT GTATGCGGGA AAGCTGCTAA
 
Protein sequence
MSIPRKRRST GKVTIADVAQ LAGVGTMTVS RALRTPEQVS DKLREKIEAA VHELGYMPNL 
AASALASASS HTIAMVVPNL AEAGCSEMFA GLQQILQPAG YQIMLAESQH RVEQEEKLLE 
TLLASNIAAA ILLSVEHSTT VRQWLKNASI PVMEMGAIRS DPIDMNIGID NVAAMYELTE 
MLIQRGYQNI GLLCANQEQW IFQQHLHGWY KAMLRHHMSP NRVINAALPP NFSTGASQLP 
EFLLAWPELD ALVCVSDELA CGALYECQRR RIKVPDDLAV VGFGDSDVSR VCQPPLTTMA 
VPHRKIGSEA GRALLERLNQ GNWSDRKSIA SSLCMRESC