Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A2448 |
Symbol | |
ID | 6485960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 2364244 |
End bp | 2364894 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 642737785 |
Product | alpha-ketoglutarate-dependent dioxygenase AlkB |
Protein accession | YP_002041526 |
Protein GI | 194446292 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3145] Alkylated DNA repair protein |
TIGRFAM ID | [TIGR00568] DNA alkylation damage repair protein AlkB |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 0.177895 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGATC TGTTTGCTGA TGAAGCGCCC TGGCAAGAGC CCCTGGCGCC TGGCGCGGTG GTGTTGCGCC GCTTTGCGTT TCGCGCGGCG CAGTCGCTAT TAGACGATAT CGGGTTTGTC GCCAGTCAGT CACCGTTTCG TCAGATGGTG ACGCCGGGCG GCTACACCAT GTCGGTGGCG ATGACCAACT GCGGCGCGTT AGGGTGGACC ACCGATCGTC ACGGTTATTG TTATGCCGTG CGCGATCCGT TGACCGATAA ACCCTGGCCT GCGCTGCCGT TATCGTTTGC CAGCGTATGT CGTCAGGCGG CAATCGCGGC AGGGTATGCG AGCTTCCAAC CGGACGCCTG CCTGATCAAT CGCTACGCGC CCGGCGCAAA ACTGTCGCTG CATCAGGATA AAGACGAGCC GGATCTGCGC GCGCCTATTA TCTCAGTTTC GTTGGGGGTG CCGGCGGTTT TTCAGTTTGG CGGTCTGCGT CGCAGCGACC CGATCCAGCG GATCTTACTG GAGCATGGCG ATATCGTGGT CTGGGGCGGC GAGTCCCGGC TGTTTTATCA TGGTATCCAG CCGCTTAAAG CGGGCTTTCA TCCCATGACC GGTGAATTTC GTTACAATCT CACCTTCCGT CAGGCAGCTG AAAAAGAATA A
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Protein sequence | MLDLFADEAP WQEPLAPGAV VLRRFAFRAA QSLLDDIGFV ASQSPFRQMV TPGGYTMSVA MTNCGALGWT TDRHGYCYAV RDPLTDKPWP ALPLSFASVC RQAAIAAGYA SFQPDACLIN RYAPGAKLSL HQDKDEPDLR APIISVSLGV PAVFQFGGLR RSDPIQRILL EHGDIVVWGG ESRLFYHGIQ PLKAGFHPMT GEFRYNLTFR QAAEKE
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