| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2433 |
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| Symbol | ccmF |
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| ID | 6485203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 2350759 |
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| End bp | 2352690 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642737771 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_002041512 |
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| Protein GI | 194444497 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 0.680457 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCCTG AATACGGCCA CGCGCTGCTG TGCCTGGCGC TCGGCGTGGC GCTGCTGCTG
TCCGTTTACC CGCTGTGGGG CGTGGCGCGC GGCGACGCGC GGATGATGGC GTCGGCCGGG
GTGTTCGCCT GGCTGCTGTT TATCTGTGTG GCGGGCGCGT TTTTCGTGCT GGTGCACGCC
TTTGTGGTTA ACGACTTCAC CGTGGCCTAT GTCGCCGGCA ACTCGAACAC GCAGCTGCCG
GTGTGGTACC GGGTGGCCGC CACCTGGGGG GCGCACGAGG GCTCGCTGCT GCTGTGGGTG
CTGCTGATGA GCGGCTGGAC CCTGGCGGTG GCGGTGTTCA GCCGGCAGGT GCCGGCGGAT
ATCGTCGCCC GGGTGCTGGC GGTGATGGGG ATGGTCTGCG CCGGTTTTCT GGCGTTCATT
CTGTTCACCT CCGGCCCGTT CGCCCGCACG CTGCCGGCCT TTCCGGTGGA GGGGCGCGAC
CTGAACCCGC TGCTGCAGGA CCCGGGGCTG ATTTTCCACC CGCCGCTGCT GTACATGGGC
TATGTCGGCT TCTCGGTGGC CTTCGCCTTC GCCATCGCCG CGCTGCTGAG CGGGCGTCTG
GACAGCGCGT TCACCCGTTT TGCCCGCCCG TGGACGCTGG CGGCGTGGGT GTTCCTGACG
CTGGGCATCG TGCTCGGCTC GGCGTGGGCC TACTACGAGC TGGGCTGGGG CGGCTGGTGG
TTCTGGGACC CGGTGGAGAA CGCCTCCTTT ATGCCGTGGC TGGCGGGCAC CGCCCTGCTG
CACTCGCTGG CGGTCACCGA ACAGCGCGCC GGCTTTAAGG CGTGGACGCT GCTGCTGTCC
ATCTGCGCCT TCTCGCTGTG CCTGCTGGGC ACCTTCCTGG TGCGCTCCGG GGTGCTGGTG
TCGGTGCACG CCTTCGCCTC CGACCCGGCG CGCGGAATGT TTATCCTCGC CTTTATGGTG
CTGGTCACCG GCGGCTCGCT GCTGCTGTTC GCCGTGCGCG GGCACAGGGT GCGTTCGCGG
GTGAACAACG CGCTGTGGTC GCGCGAGTCG CTGCTGCTCG GCAACAACGT CCTGCTGATG
GCCGCCATGC TGGTGGTGCT GCTGGGCACC CTGCTGCCGC TGGTGCACAA ACAGCTGGGG
CTGGGCAGCA TTTCGGTGGG GGAGCCGTTC TTTAACACCA TGTTCACCTG GCTGATGGTC
CCCTTTGCCC TGCTGCTGGG GGTGGGGCCG CTGGTGCGCT GGGGCCGGGA CCGGCCGCGT
AACATCAGGA CGCTGCTGCT CACCGCCCTG GTCTCCACCC TGGTGCTGTC GGTACTTTTG
CCGTGGCTGC TGGAAGATAA AATCATCGCC ATGACGGCGG TGGGGATGGC GATGGCCTGC
TGGATTGCGG TGCTGGCGGT GGCCGAAGCC GTACAGCGCG TGTCCCGCGG CACGAAAACC
TCTCTCAGCT ACTGGGGAAT GGTGGCGGCG CACCTCGGGC TGGCGGTGAC GATTACCGGC
ATCGCCTTCA GCCAGAATTA CAGCGTGGAG CGTGACGTGC GGATGCGGGC GGGCGACAGC
GTGACCATTC ACGACTACCG CTTCACCTTC CGGGAGGTGC GGGACATCAC CGGGCCCAAC
TACCGCGGCG GGGTGGCCCT CATCGGGGTG ACGCGCCACG GCGAGCCGGA GGCGGTGCTG
CACGCGGAGA AACGGCTCTA CAACACCAGC CGGATGGTGA TGACCGAGGC GGCGATTGAC
GGCGGACTGA CCCGCGACCT GTACGCCGCG CTCGGGGAGG AGCTGGACAA CGGCGCGTGG
GCCGTGCGCC TGTATTACAA ACCGTTTGTC CGCTGGATAT GGGCCGGGGG GCTGCTGATG
GCGCTGGGCG GGCTGCTGTG CCTGGCGGAC CCGCGCTACC GCCGCCGTAA ACCATTGCCG
GAGGCCGGAT GA
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| Protein sequence | MMPEYGHALL CLALGVALLL SVYPLWGVAR GDARMMASAG VFAWLLFICV AGAFFVLVHA
FVVNDFTVAY VAGNSNTQLP VWYRVAATWG AHEGSLLLWV LLMSGWTLAV AVFSRQVPAD
IVARVLAVMG MVCAGFLAFI LFTSGPFART LPAFPVEGRD LNPLLQDPGL IFHPPLLYMG
YVGFSVAFAF AIAALLSGRL DSAFTRFARP WTLAAWVFLT LGIVLGSAWA YYELGWGGWW
FWDPVENASF MPWLAGTALL HSLAVTEQRA GFKAWTLLLS ICAFSLCLLG TFLVRSGVLV
SVHAFASDPA RGMFILAFMV LVTGGSLLLF AVRGHRVRSR VNNALWSRES LLLGNNVLLM
AAMLVVLLGT LLPLVHKQLG LGSISVGEPF FNTMFTWLMV PFALLLGVGP LVRWGRDRPR
NIRTLLLTAL VSTLVLSVLL PWLLEDKIIA MTAVGMAMAC WIAVLAVAEA VQRVSRGTKT
SLSYWGMVAA HLGLAVTITG IAFSQNYSVE RDVRMRAGDS VTIHDYRFTF REVRDITGPN
YRGGVALIGV TRHGEPEAVL HAEKRLYNTS RMVMTEAAID GGLTRDLYAA LGEELDNGAW
AVRLYYKPFV RWIWAGGLLM ALGGLLCLAD PRYRRRKPLP EAG
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