Gene SNSL254_A2266 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A2266 
Symbol 
ID6483680 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp2176176 
End bp2177375 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content34% 
IMG OID642737613 
ProductO-antigen polymerase 
Protein accessionYP_002041355 
Protein GI194445247 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.0000330742 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTGCCAT TTCCACCAGG AGCAATCCTA AGGGATGTAC TCAATGTATT TTTTGTGGCG 
TTAGTGCTAG TTCGATTTGT CATTGATAGG AAAAAAACTT ATTTCCCGTT GGTTTTTACT 
ATTTTTTCAT GGTCGGCGGT AATACTATGG GTAATAGCGT TAACTATATT CTCACCGGAT 
AAAATTCAAG CAATTATGGG GGGGCGGAGT TATATTTTAT TCCCGGCAGT TTTCATAGCA 
TTAGTGATTT TAAAAGTATC ATACCCGCAA TCCTTAAATA TTGAAAAAAT AGTTTGCTAC 
ATAATTTTTC TAATGTTTAT GGTTGCGACA ATATCTATTA TTGATGTACT AATGAATGGA 
GAGTTCATTA AATTGCTCGG ATATGATGAG CATTATGCAG GAGAACAATT AAACTTAATT 
AATAGCTATG ATGGGATGGT CCGGGCTACA GGCGGTTTTA GTGATGCTCT CAATTTTGGA 
TATATGCTCA CATTAGGTGT TTTGTTATGT ATGGAGTGTT TTTCCCAAGG ATATAAAAGA 
TTATTGATGC TCATTATTAG TTTTGTGCTA TTTATAGCGA TCTGCATGAG TCTTACTAGA 
GGAGCAATAC TTGTTGCTGC GCTTATTTAC GCACTTTATA TAATTTCAAA TCGGAAGATG 
CTTTTTTGTG GAATAACTTT ATTTGTAATA ATTATACCCG TTTTAGCAAT TTCTACTAAT 
ATTTTTGACA ACTATACAGA AATTTTGATC GGCAGGTTTA CAGATTCGTC TCAGGCATCG 
CGTGGATCTA CACAGGGGCG GATAGATATG GCAATTAATT CATTAAACTT CCTGTCAGAA 
CATCCATCAG GTATAGGTCT GGGTACTCAA GGTTCAGGAA ACATGCTTTC GGTAAAAGAT 
AATAGGTTAA ATACGGATAA TTATTTTTTC TGGATCGCCC TTGAGACTGG TATTATTGGC 
TTAATCATAA ATATTATTTA TCTGGCAAGT CAATTTTATT CTTCAACTTT ACTAAATAGA 
ATATATGGCA GTCATTGTAG CAATATGCAC TATAGATTAT ATTTTCTCTT TGGAAGTATA 
TATTTTATAA GTGCAGCGTT AAGTTCAGCA CCTTCGTCAT CAACTTTTTC TATATATTAT 
TGGACAGTTT TAGCTTTGAT TCCATTTTTA AAATTAACAA ATAGACGGTG CACGCGATAA
 
Protein sequence
MLPFPPGAIL RDVLNVFFVA LVLVRFVIDR KKTYFPLVFT IFSWSAVILW VIALTIFSPD 
KIQAIMGGRS YILFPAVFIA LVILKVSYPQ SLNIEKIVCY IIFLMFMVAT ISIIDVLMNG 
EFIKLLGYDE HYAGEQLNLI NSYDGMVRAT GGFSDALNFG YMLTLGVLLC MECFSQGYKR 
LLMLIISFVL FIAICMSLTR GAILVAALIY ALYIISNRKM LFCGITLFVI IIPVLAISTN 
IFDNYTEILI GRFTDSSQAS RGSTQGRIDM AINSLNFLSE HPSGIGLGTQ GSGNMLSVKD 
NRLNTDNYFF WIALETGIIG LIINIIYLAS QFYSSTLLNR IYGSHCSNMH YRLYFLFGSI 
YFISAALSSA PSSSTFSIYY WTVLALIPFL KLTNRRCTR