| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2239 |
|---|
| Symbol | dacD |
|---|
| ID | 6485547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 2144704 |
|---|
| End bp | 2145876 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642737587 |
|---|
| Product | D-alanyl-D-alanine carboxypeptidase |
|---|
| Protein accession | YP_002041329 |
|---|
| Protein GI | 194445713 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.691667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 69 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTTGA AACGCCGTTT GTTTATTGCC GCTTCTTTAT TCGCGATGCA CCTTTCTCCT
GCGCTTGCGG CCGATGCCGT AAGTTTTGCT CCCCAACCGC CAGCCATTGA TGCAGGCGCC
TGGGTGTTGA TGGATTACAC TACGGGACAG GTTCTTACCG CCGGTAATGA ACACCAGCAA
CGTAATCCCG CCAGCCTTAC CAAGCTAATG ACGGGCTACG TCGTCGATCG CGCCATCGAT
AGTCATCGTA TCAGCCCTGA CGATATCGTC ACCGTTGGGC GCGACGCCTG GGCGAAGGAT
AATCCGGTGT TTGTCGGCTC CTCGTTGATG TTTTTAAAAG AAGGGGATCG CGTGTCGGTA
CGCGATTTAA GCCGTGGCTT AATTGTGGAT TCCGGTAACG ATGCCTGTGT GGCGCTGGCG
GATTATATCG CGGGCGGGCA GCCGCAGTTT GTGGCGATGA TGAACAGCTA TGTGAAAAAA
CTCAATTTGC AGGATACCCA TTTTGAAACC GTCCACGGTC TGGATGCGCC GGGACAACAT
AGCTCCGCGT ATGATCTGGC CGTACTCTCC CGGGCGATTA TTCACGGCGA ACCTGAATTT
TATCACATGT ACAGCGAGAA AAGCCTGACC TGGAACGGCA TCACGCAGCA GAACCGCAAC
GGCTTGTTGT GGGATAAGAC CATGCATATC GATGGGCTTA AAACCGGACA CACATCGGGG
GCGGGATTTA ATCTTATCGC ATCGGCGGTG GACGGGCAGC GTCGACTTAT CGCCGTCGTG
ATGGGGGCGA AAAGTTCGAA AGGCCGTGAG GAACAGGCGC GAAAACTGTT GCAGTGGGGC
CAGCAAAACT TTGCGACGGT GCAGATTTTG CACAGCGGTA AAAAAGTGGG CAGCGAGCGA
ATCTGGTATG GAGATAAAGA AAAGATTGCG CTGGGTACGG AACAGGATTT CTGGATGGCG
CTGCCTAAAG CGGAAATTCC GCATATCAAA GCAAAATATG TGCTGGATAG AAAAGAGCTG
GAGGCGCCAA TCGCCGCTCA TCAACGGGTA GGTGAAATAG AGCTATACGA TCGGGATAAA
CTGATCGCTC AGTGGCCGCT GGTCACTCTG GAGTCGGTGG GTAAAGGCGG TATGTTCTCT
CGTCTGAGCG ACTATTTTCA GCATAAAGCG TAA
|
|---|
| Protein sequence | MLLKRRLFIA ASLFAMHLSP ALAADAVSFA PQPPAIDAGA WVLMDYTTGQ VLTAGNEHQQ
RNPASLTKLM TGYVVDRAID SHRISPDDIV TVGRDAWAKD NPVFVGSSLM FLKEGDRVSV
RDLSRGLIVD SGNDACVALA DYIAGGQPQF VAMMNSYVKK LNLQDTHFET VHGLDAPGQH
SSAYDLAVLS RAIIHGEPEF YHMYSEKSLT WNGITQQNRN GLLWDKTMHI DGLKTGHTSG
AGFNLIASAV DGQRRLIAVV MGAKSSKGRE EQARKLLQWG QQNFATVQIL HSGKKVGSER
IWYGDKEKIA LGTEQDFWMA LPKAEIPHIK AKYVLDRKEL EAPIAAHQRV GEIELYDRDK
LIAQWPLVTL ESVGKGGMFS RLSDYFQHKA
|
|---|
| |