| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2150 |
|---|
| Symbol | |
|---|
| ID | 6486206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 2073997 |
|---|
| End bp | 2075709 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642737504 |
|---|
| Product | cellulose synthesis regulatory protein |
|---|
| Protein accession | YP_002041251 |
|---|
| Protein GI | 194446695 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.297138 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.0131316 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCACG AAACACTGTT AGACAATCAA GGCTGGTTTA AAAAGCTGGC GCGGCGTTTT
GGTCCCGGTC ATGTCGTCAA CACCTGTTTT CTGATCGTGA TGCTGTTCTC GACGCTACTT
ACCTGGCGGG AAGTGATGAT ACTGAAAGAC GCGTATGTCG CCAGTCAGCG CAATCATCTG
GGGAGCGTCG CGAATGTCCT TGACCGCCAA CTGCAATTCA ACATGGACAG GTTGATCTTT
TTACGCAACG GTATGCATGA AGCGCTGGTG GCGCCGCTGG CTTTTTCCGC ATTGCAAAGC
GCGGTGACGC AGTTTGAGCA ACGACGCGTC AGACATTTCT GGCAACTGGA GCTGGATAAG
CGGCGGACAT TGCCGTTATA TGGCGTTTCC GATCAATTTG TCGCCCGGAC GACGCTTCTT
TCGCGGGAGA GTCGTGACCT GGCAAATGAA TTAACCGCCA CTCTGGAGTT AGGGTATCTG
GCGCGTCTGG CTCGCTCATC CGCCATGCTG ACGCTGGAGA CGATGTATGT TTCTCGCTCA
GGGTTTTACC TCTCAACTCT CCCTACGGCG TACGGTAGCG ATATTGTCTC CCGTTACTAT
CAGTACGTGA CTCAGCCCTG GTTTATCGAG CAAAGCCAAC GGCGTAACCC ACAGCGCGGC
GTGCGGTGGT TTACCTCCGC ACAGTCCTAT GTTGCTGACG AGCAGAAAAA AGTGACAGCC
AGTCTACCGC TGGATCACGA TAATTACTGG TATGGCGTAC TGGCAATGGA TATTCCCGTC
GCGTCATTAC AGCGGTTCCT GCGCGATGCG GCCGAAAAGG ATATTGAAGG GGAATATCAG
CTATACGATA ACCATCTCCG TTTGTTGACG GACTCCGCGC CGGAACAACA AACCGCGAAT
ACGTTAAATG ACCGTGAGCG CGCCTTACTG GCGCGTGAAA TAGAAAAAGA TACCCTGGGC
GGGCTGCGTT TAGGAACGCA TTATGTAAGC TGGGAGCGGC TGGATCATTT TGATGGCGTC
CTGCTGCGCG TGCATACACT ACGTGAAGGC ATCCAAGGGA ATTTTGGCAG TATTAGTATC
GCGCTGACGC TGTTATGGGT GCTTTTTACG GCGATGCTGT TGATCTCCTG GGGCGTTATT
CGACATATGG TCAAAAACAT GTTTGTTCTG CAAAATTCGC TGCAATGGCA GGCATGGCAC
GATCCGCTGA CCCGGCTATA TAACCGTGGC GCGCTGTTTG AAAAAGCGTC CAGGCTGGCA
AAGCGCTATC GGGAAGCCCG CCAGCCATTT TCTGTGATAC AACTGGACTT AGATTATTTT
AAAAGCGTTA ACGATCGCTT TGGCCATCAG GCAGGCGATC GCGTGTTGTC CCATGCCGCT
GGGCTCATTG GCAGCACCAT TCGAGCGCAC GACATCGCCG GACGGGTAGG GGGCGAAGAG
TTTTGTATCG TGCTGCCCGG TGCGACGAAA GCGCAGGCGC TGCAGATTGC CGAACGCATA
CGCCAGCGCA TTAATGACAA AGAGATTCTG GTGACGAAAA GCACGACGCT TCGTATCAGC
GCGTCAATGG GGATCAGTAG CGCGGAGGAA TACGGCGACT ATGATTTTGA GCAGTTGCAG
TCGCTGGCCG ACAAACGGCT TTATTACGCC AAACAGTCCG GACGTAACCG TATTTGCGCC
AGCGACGCGA CTCAGGAGCG GGAAAAGAAA TAG
|
|---|
| Protein sequence | MPHETLLDNQ GWFKKLARRF GPGHVVNTCF LIVMLFSTLL TWREVMILKD AYVASQRNHL
GSVANVLDRQ LQFNMDRLIF LRNGMHEALV APLAFSALQS AVTQFEQRRV RHFWQLELDK
RRTLPLYGVS DQFVARTTLL SRESRDLANE LTATLELGYL ARLARSSAML TLETMYVSRS
GFYLSTLPTA YGSDIVSRYY QYVTQPWFIE QSQRRNPQRG VRWFTSAQSY VADEQKKVTA
SLPLDHDNYW YGVLAMDIPV ASLQRFLRDA AEKDIEGEYQ LYDNHLRLLT DSAPEQQTAN
TLNDRERALL AREIEKDTLG GLRLGTHYVS WERLDHFDGV LLRVHTLREG IQGNFGSISI
ALTLLWVLFT AMLLISWGVI RHMVKNMFVL QNSLQWQAWH DPLTRLYNRG ALFEKASRLA
KRYREARQPF SVIQLDLDYF KSVNDRFGHQ AGDRVLSHAA GLIGSTIRAH DIAGRVGGEE
FCIVLPGATK AQALQIAERI RQRINDKEIL VTKSTTLRIS ASMGISSAEE YGDYDFEQLQ
SLADKRLYYA KQSGRNRICA SDATQEREKK
|
|---|
| |