| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2131 |
|---|
| Symbol | fliF |
|---|
| ID | 6483721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 2060730 |
|---|
| End bp | 2062469 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642737487 |
|---|
| Product | flagellar MS-ring protein |
|---|
| Protein accession | YP_002041234 |
|---|
| Protein GI | 194445262 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
|---|
| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.0000362191 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCTTG TTCCACTTTG CAAAAAACGC CGTCCACGAT CAGTCACGAG GTGCGAGATG
AGTGCGACTG CATCGACTGC AACCCAACCT AAACCTCTCG AGTGGCTTAA TCGCCTACGC
GCGAATCCCC GAATTCCGTT AATTGTGGCG GGTTCCGCTG CCGTGGCGAT CGTCGTTGCG
ATGGTGCTGT GGGCCAAAAC GCCCGATTAC CGCACGCTAT TTAGCAACCT TTCCGATCAG
GACGGCGGCG CGATCGTCGC GCAGTTGACC CAGATGAATA TCCCCTATCG CTTTGCCAAT
GGCAGCGGCG CGATTGAAGT GCCCGCCGAC AAAGTGCATG AACTGCGTCT GCGTCTGGCG
CAGCAGGGGC TGCCTAAAGG CGGCGCGGTA GGCTTTGAAC TGCTTGATCA GGAAAAATTC
GGTATCAGCC AGTTCAGCGA GCAGGTGAAT TATCAGCGCG CGCTGGAAGG TGAACTGGCC
CGGACGATCG AGACGCTGGG GCCGGTAAAA AGCGCCCGCG TTCACCTGGC GATGCCAAAG
CCGTCGCTAT TTGTGCGGGA ACAAAAATCC CCTTCCGCCT CCGTCACCGT CACACTGGAA
CCGGGACGGG CGCTGGATGA AGGACAAATT AGCGCCGTGG TACATCTGGT TTCCAGCGCT
GTCGCCGGTT TGCCGCCAGG AAACGTCACT CTGGTCGATC AATCCGGTCA TCTGCTCACG
CAATCCAATA CCAGCGGTCG CGACCTTAAT GACGCGCAAT TAAAATTTGC TAATGATGTG
GAAAGCCGCA TCCAACGCCG TATCGAAGCC ATTCTGTCGC CTATCGTCGG GAACGGTAAT
GTTCACGCTC AGGTAACCGC CCAGTTGGAT TTTGCCAATA AAGAACAGAC GGAAGAGCAC
TACAGCCCGA ACGGCGATGC GTCGAAGGCC ACCCTGCGTT CACGTCAGTT GAATATTAGC
GAACAAGTAG GCGCGGGCTA TCCCGGCGGT GTGCCTGGCG CGCTGTCGAA CCAACCAGCG
CCGCCTAACG AGGCGCCGAT CGCCACGCCG CCGACCAATC AACAAAACGC GCAGAATACG
CCACAAACCA GCACCAGTAC CAACAGTAAC AGTGCTGGCC CGCGCAATAC GCAGCGTAAT
GAAACCAGTA ACTACGAAGT GGACCGCACC ATTCGTCACA CCAAAATGAA TGTGGGCGAT
ATTGAGCGTC TCTCCGTGGC CGTCGTGGTG AATTACAAAA CGCTGGCAGA TGGCAAACCG
CTGCCATTGA CCGCCGATCA GATGAAACAG ATCGAGGATT TAACCCGTGA AGCGATGGGT
TTTTCTGATA AACGCGGCGA TACGCTAAAT GTGGTGAATT CACCGTTTAG CGCAGTGGAT
AACACCGGCG GCGAACTGCC CTTCTGGCAA CAGCAGTCCT TTATCGATCA GTTGCTCGCG
GCAGGTCGCT GGTTGCTGGT GCTGGTGGTG GCCTGGATTC TGTGGCGCAA AGCGGTACGT
CCGCAGTTGA CGCGCCGCGT TGAAGAAGCG AAAGCGGCGC AGGAACAGGC ACAGGTTCGC
CAGGAAACCG AAGAAGCCGT GGAAGTACGC CTTAGTAAAG ACGAGCAGCT CCAGCAACGC
CGGGCTAACC AGCGTCTGGG CGCCGAGGTG ATGAGCCAGC GTATTCGCGA AATGTCAGAC
AACGATCCGC GCGTGGTGGC GCTGGTCATT CGCCAGTGGA TGAGTAACGA TCATGAGTAA
|
|---|
| Protein sequence | MSLVPLCKKR RPRSVTRCEM SATASTATQP KPLEWLNRLR ANPRIPLIVA GSAAVAIVVA
MVLWAKTPDY RTLFSNLSDQ DGGAIVAQLT QMNIPYRFAN GSGAIEVPAD KVHELRLRLA
QQGLPKGGAV GFELLDQEKF GISQFSEQVN YQRALEGELA RTIETLGPVK SARVHLAMPK
PSLFVREQKS PSASVTVTLE PGRALDEGQI SAVVHLVSSA VAGLPPGNVT LVDQSGHLLT
QSNTSGRDLN DAQLKFANDV ESRIQRRIEA ILSPIVGNGN VHAQVTAQLD FANKEQTEEH
YSPNGDASKA TLRSRQLNIS EQVGAGYPGG VPGALSNQPA PPNEAPIATP PTNQQNAQNT
PQTSTSTNSN SAGPRNTQRN ETSNYEVDRT IRHTKMNVGD IERLSVAVVV NYKTLADGKP
LPLTADQMKQ IEDLTREAMG FSDKRGDTLN VVNSPFSAVD NTGGELPFWQ QQSFIDQLLA
AGRWLLVLVV AWILWRKAVR PQLTRRVEEA KAAQEQAQVR QETEEAVEVR LSKDEQLQQR
RANQRLGAEV MSQRIREMSD NDPRVVALVI RQWMSNDHE
|
|---|
| |