| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2071 |
|---|
| Symbol | |
|---|
| ID | 6483914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 2011386 |
|---|
| End bp | 2012525 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642737427 |
|---|
| Product | glycosyl hydrolase, family 88 |
|---|
| Protein accession | YP_002041177 |
|---|
| Protein GI | 194442446 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.00000233336 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGGTTT ATCCAGTCAA ACACAGTCCG CTATTGCGTC AGCCTGAGCA TTTTATCGCC
AGAGATGAAC TAAAAGCCCT GGTGCAAAAG GTGACGCATA ACCTGGTCAA TATTAAAGAT
GAGACAGGCG AATTTTTATT GCGACTGGAC GACGGACGCG TGATCGATAC TAAAGGCTGG
GCCGGATGGG AGTGGACGCA CGGCGTGGGC CTGTACGGAA TGTATCACTA TTACCAACAG
ACCGGCGACC AGACGATGCG TAAGATCATT GATGACTGGT TTGCCGATCG TTTTGCGGAA
GGCGCGACGA CGAAAAACGT TAATACGATG GCGCCGTTTT TAACGTTGGC GTATCGCTAT
GAAGAGACGC GTAATCCAGC GTATTTACCG TGGCTGGAAA CGTGGGCCGA ATGGGCGATG
AATGAAATGC CCCGAACCGA TCACGGCGGA ATGCAGCACA TCACGCTGGC GGAGGAAAAT
CATCAGCAGA TGTGGGACGA CACGCTAATG ATGACGGTGC TGCCGCTGGC GAAAATCGGT
AAACTGTTGA ACCGGCCGGA ATATGTGGAA GAGGCAACCT ATCAGTTCCT GCTGCACGTG
CAGAATTTGA TGGATAAAGA GACGGGGCTG TGGTTCCACG GCTGGAGCTA TGACGGTCAT
CATAACTTCG CTAATGCTCG CTGGGCGCGC GGCAACAGCT GGCTGACCAT TGTGATCCCG
GATTTTCTTG AACTGCTGGA CTTGCCGGAA AATAATGCCG TGCGCCGTTA CCTGGTCCAG
GTACTGAATG CGCAGATCGC CGCGCTGGCG AAATGTCAGG ATAAAAGCGG TTTGTGGCAT
ACGCTGCTTG ACGATCCGCA CTCTTATCTT GAGGCGTCGG CGACGGCGGG TTTTGCCTAC
GGTATTCTTA AAGCGGTGCG CAAACGCTAT GTCGAACGGC ACTATGCGCA GGTGGCGGAA
AAAGCTATTC GGGGGATAGT GAAACATATC TCGCCGGAAG GCGAACTGCT GCAAACGTCA
TTTGGCACTG GCATGGGCCA CGATCTCGAT TTTTACCGTC ATATTCCGTT GACCTCTATG
CCTTACGGGC AGGCGATGGC AATGCTGTGT TTGACGGAAT ATCTGCGTAA CTATTTCTGA
|
|---|
| Protein sequence | MMVYPVKHSP LLRQPEHFIA RDELKALVQK VTHNLVNIKD ETGEFLLRLD DGRVIDTKGW
AGWEWTHGVG LYGMYHYYQQ TGDQTMRKII DDWFADRFAE GATTKNVNTM APFLTLAYRY
EETRNPAYLP WLETWAEWAM NEMPRTDHGG MQHITLAEEN HQQMWDDTLM MTVLPLAKIG
KLLNRPEYVE EATYQFLLHV QNLMDKETGL WFHGWSYDGH HNFANARWAR GNSWLTIVIP
DFLELLDLPE NNAVRRYLVQ VLNAQIAALA KCQDKSGLWH TLLDDPHSYL EASATAGFAY
GILKAVRKRY VERHYAQVAE KAIRGIVKHI SPEGELLQTS FGTGMGHDLD FYRHIPLTSM
PYGQAMAMLC LTEYLRNYF
|
|---|
| |