| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1989 |
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| Symbol | yebU |
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| ID | 6485439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 1946841 |
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| End bp | 1948382 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642737354 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_002041104 |
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| Protein GI | 194444109 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.00458134 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGGTACC GCTCTGCCAC GTTAAACACC CGGCTCCGGC GTACTCGCGC CGGAGCGTTT
TATGCTACAC TGCGCGCCTG TTTTTTTGCC GGCGATACAC CTGTGGCTCA ACACGCTGTC
TATTTTCCTG ACGCTTTTCT GACGCAAATG CGTGAAGCAA TGCCTTCCAC GCTCTCTTTT
GATGAATTTA TTTCGGCCTG CCAACGCCCG TTGCGCCGCA GTATACGCAT CAATACGCTT
AAAATCTCCG TGGCTGATTT CCTTGCCCTA ATCGCGCCCT ACGGCTGGTC GCTCACGCCA
ATTCCGTGGT GTCATGAAGG ATTCTGGATC GAGCGCGATG ATGAAGAGGC ATTGCCGCTT
GGCAGTACCG CTGAGCATTT AAGCGGCCTA TTTTACATTC AGGAGGCCAG TTCGATGCTG
CCGGTCGCGG CCCTGTTCGC CGATGATAAT CATCCGCAGC GGGTCATGGA TATGGCAGCG
GCGCCTGGCT CCAAAACCAC GCAGATCGCT GCCCGCATGG GGAACCGCGG CGCCATTCTG
GCCAACGAAT TTTCGGCCAG CCGCGTCAAA GTTCTGCACG CTAATATCAG CCGATGTGGA
ATCGCCAATA CCGCACTGAC GCATTTCGAT GGCCGCGTAT TTGGCGCTGC GTTACCGGAG
ATGTTTGACG CTATCCTGCT GGATGCGCCC TGCTCTGGCG AAGGCGTAGT ACGTAAAGAT
CCTGATGCGC TAAAAAACTG GTCGCCAGAA AGCAATCTGG ATATCGCGGC GACACAGCGG
GAACTGCTCG ACAGCGCTTT TCATGCTTTA CGACCCGGCG GCACGCTGGT CTACTCCACC
TGCACGTTAA ATCGCCAGGA AAACGAAGCG GTCTGCCTCT GGCTGAAAGA GACCTACGCC
GACGCCGTTG AATTTTTGCC GCTGGGTGAT CTGTTTCCTG ACGCTGACCG CGCCCTCACC
CCGGAAGGCT TCCTGCACGT CTTCCCGCAA ATTTACGACT GCGAAGGATT CTTCGTCGCA
CGTCTGCGTA AAATGTCATC CCTTCCAGCC ATGCCCGCGC CGGGGTATAA AGTGGGGGCG
TTTCCTTTTA CCCCCCTCAA AGGCCGCGAA GCATTACACG TTACCCAGGC GGCCAACGCC
GTCGGACTGT TATGGGATGA AAATCTCCAT CTTTGGCAGC GTGAAAAAGA GGTCTGGCTG
TTCCCGGCAG AAATTGAATC ACTGATCGGA AAAGTCCGTT TTTCCCGGCT CGGCATTAAG
CTGGCCGAAA GTCATAATAA AGGCTATCGC TGGCAACATG AGGCGACGAT AGCCCTTGCC
TGCCCGACTC ATGCTCACGC GTTCGAACTT TCTGTGCAAG AGGCGGAGGA GTGGTATCGC
GGTCGGGATA TTTATCCGCA AACACCCCCT GCCGCTGATG ATGTCCTGGT GACGTTCCAG
CATCAGCCGC TTGGTCTGGC AAAACGTATC GGCTCAAGAA TAAAGAACAG TTACCCGCGT
GAACTGGTAC GTGATGGCAA ACTCTTTACT GGTAATAGTT AA
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| Protein sequence | MGYRSATLNT RLRRTRAGAF YATLRACFFA GDTPVAQHAV YFPDAFLTQM REAMPSTLSF
DEFISACQRP LRRSIRINTL KISVADFLAL IAPYGWSLTP IPWCHEGFWI ERDDEEALPL
GSTAEHLSGL FYIQEASSML PVAALFADDN HPQRVMDMAA APGSKTTQIA ARMGNRGAIL
ANEFSASRVK VLHANISRCG IANTALTHFD GRVFGAALPE MFDAILLDAP CSGEGVVRKD
PDALKNWSPE SNLDIAATQR ELLDSAFHAL RPGGTLVYST CTLNRQENEA VCLWLKETYA
DAVEFLPLGD LFPDADRALT PEGFLHVFPQ IYDCEGFFVA RLRKMSSLPA MPAPGYKVGA
FPFTPLKGRE ALHVTQAANA VGLLWDENLH LWQREKEVWL FPAEIESLIG KVRFSRLGIK
LAESHNKGYR WQHEATIALA CPTHAHAFEL SVQEAEEWYR GRDIYPQTPP AADDVLVTFQ
HQPLGLAKRI GSRIKNSYPR ELVRDGKLFT GNS
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