| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1841 |
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| Symbol | topA |
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| ID | 6484510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 1806141 |
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| End bp | 1808738 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642737216 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_002040968 |
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| Protein GI | 194442541 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.253396 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0000000000877757 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTAAAG CTCTTGTCAT CGTTGAGTCC CCGGCAAAAG CCAAAACGAT CAACAAGTAT
CTGGGTAATG ACTACGTGGT GAAATCCAGC GTGGGTCATA TCCGTGATTT GCCGACCAGT
GGCTCAGCAG CTAAAAAGAG CGCCGACTCT ACCTCCACCA AAACGGCTAA AAAGCCCAAA
AAGGATGAAC GTGGCGCTCT CGTCAACCGT ATGGGGGTTG ACCCGTGGCA CAACTGGGAT
GCGCACTATG AAGTGCTGCC CGGTAAAGAG AAGGTCGTCT CTGAACTGAA ACAGTTGGCG
GAAAAAGCCG ACCACATCTA TCTCGCAACC GACCTTGACC GCGAAGGGGA AGCCATTGCA
TGGCACCTGC GGGAAGTGAT CGGCGGCGAT GACGCGCGCT ACAGCCGCGT AGTCTTTAAC
GAAATAACCA AAAATGCCAT TCGCCAGGCG TTTGAACAGC CGGGCGAGCT GAACATTAAC
AGGGTCAACG CCCAGCAAGC GCGCCGCTTT ATGGACCGCG TGGTAGGCTA TATGGTCTCG
CCGCTGCTGT GGAAAAAGAT CGCCCGTGGT TTGTCGGCAG GTCGCGTTCA GTCTGTCGCG
GTCCGTCTGG TCGTTGAACG CGAGCGCGAG ATTAAAGCGT TTGTTCCGGA AGAGTTCTGG
GAAATTGACG CCAATACGAC GACGCCGTCT GGCGAGGCGC TACCGCTACA GGTCACGCAT
CAGAACGACA AGCCATTCCG GCCGGTAAAT CGCGAGCAGA CGCTTGCCGC CGTCAGCTTG
CTGGAAAAAG CGCGCTATAG CGTACTGGAG CGTGAAGACA AACCGACCAG CAGCAAACCT
GGCGCGCCGT TTATCACCTC CACGCTACAA CAGGCGGCCA GCACCCGGCT GGGCTTTGGC
GTGAAGAAAA CCATGATGAT GGCGCAGCGT CTGTATGAGG CGGGCTACAT CACCTATATG
CGTACCGACT CCACCAACCT GAGTCAGGAT GCGGTCAACA TGGTGCGCGG CTATATTGGC
GATAATTTCG GCAAGAAATA CCTGCCGGAT AACCCGAACC AGTACGCCAG CAAAGAAAAC
TCTCAGGAAG CGCACGAAGC GATCCGTCCT TCCGACGTTG CTGTCATGGC GGAGTCGCTG
AAAGACATGG AGGCTGACGC GCAGAAGTTG TATCAGCTAA TTTGGCGTCA GTTTGTCGCC
TGTCAGATGA CGCCAGCACA ATATGACTCC ACTACGCTTA CCGTTGGCGC AGGCGAATTC
CGTCTGAAAG CGCGTGGGCG TATTTTGCGC TTTGACGGCT GGACAAAAGT GATGCCGGCG
CTGCGTAAAG GCGATGAAGA TCGCACATTG CCTGCCGTGA ATAAGGGCGA TGCGCTGACG
CTACTTGAAT TGACGCCTGC TCAGCACTTT ACTAAACCGC CAGCCCGTTT CAGCGAGGCT
TCTCTGGTTA AAGAACTTGA GAAGCGCGGT ATTGGTCGTC CGTCTACCTA TGCGTCGATT
ATCTCGACCA TTCAGGATCG CGGCTATGTT CGCGTTGAAA ACCGTCGCTT CTATGCGGAA
AAAATGGGTG AAATCGTCAC CGACCGGCTG GAAGAAAACT TCCGCGAATT GATGAACTAC
GATTTTACCG CGCAGATGGA AGATAGTCTG GATCAGGTTG CGAATCACCA GGCCGAGTGG
AAAGCGGTAC TGGATAACTT CTTCAGCGAT TTTACTCAGC AGCTCGATAA AGCCGAGAAA
GATCCGGAAG AAGGGGGGAT GCGTCCTAAC CAGATGGTGC TGACCAGCAT CGACTGTCCA
ACCTGTGGCC GTAAAATGGG AATTCGTACT GCCAGTACGG GGGTTTTCCT TGGTTGTTCA
GGTTATGCGC TTTCGCCGAA AGAGCGTTGT AAAACGACCA TTAACCTGGT GCCGGAAAAT
GAAGTTCTGA ACGTGCTGGA AGGCGACGAC GCCGAAACCA ACGCCCTGCG CGCCAAGCGT
CGCTGTCAGA AGTGCGGTAC GGCGATGGAC AGCTATCTGA TCGATCCGAA GCGTAAATTA
CATGTGTGTG GTAATAACCC GACCTGTGAC GGCTACGAGA TTGAAGAAGG CGAGTTCCGC
ATCAAAGGGT ATGACGGCCC GATCGTTGAG TGTGAGAAAT GTGGTTCCGA AATGCACCTG
AAAATGGGGC GTTTTGGTAA GTACATGGCC TGTACGAACG ACGAATGTAA AAATACCCGT
AAGATCTTGC GTAACGGCGA AGTTGCGCCG CCGAAGGAAG ATCCTGTTCC ATTGCCGGAA
CTGCCGTGTG AAAAATCGGA CGCGTACTTT ATGCTGCGCG ATGGCGCCGC AGGGATATTC
CTGGCGGCCA ATACGTTCCC GAAATCACGC GAAACGCGCG CGCCATTAGT CGAGGAGCTT
TACCGGTTCC GCGATCGCCT GCCGGAAAAA CTGCGTTATC TGGCGGATGC GCCGCAGCAG
GACCCGGAAG GCAATAAAAC CGTTGTTCGC TTTAGCCGCA AAACAAAACA GCAGTACGTT
GCGGCGGAAA AAGACGGGAA GGCGACGGGA TGGTCAGCGT TCTTCGTCGA CGGCAAGTGG
GTTGAAGGCA AGAAATAA
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| Protein sequence | MGKALVIVES PAKAKTINKY LGNDYVVKSS VGHIRDLPTS GSAAKKSADS TSTKTAKKPK
KDERGALVNR MGVDPWHNWD AHYEVLPGKE KVVSELKQLA EKADHIYLAT DLDREGEAIA
WHLREVIGGD DARYSRVVFN EITKNAIRQA FEQPGELNIN RVNAQQARRF MDRVVGYMVS
PLLWKKIARG LSAGRVQSVA VRLVVERERE IKAFVPEEFW EIDANTTTPS GEALPLQVTH
QNDKPFRPVN REQTLAAVSL LEKARYSVLE REDKPTSSKP GAPFITSTLQ QAASTRLGFG
VKKTMMMAQR LYEAGYITYM RTDSTNLSQD AVNMVRGYIG DNFGKKYLPD NPNQYASKEN
SQEAHEAIRP SDVAVMAESL KDMEADAQKL YQLIWRQFVA CQMTPAQYDS TTLTVGAGEF
RLKARGRILR FDGWTKVMPA LRKGDEDRTL PAVNKGDALT LLELTPAQHF TKPPARFSEA
SLVKELEKRG IGRPSTYASI ISTIQDRGYV RVENRRFYAE KMGEIVTDRL EENFRELMNY
DFTAQMEDSL DQVANHQAEW KAVLDNFFSD FTQQLDKAEK DPEEGGMRPN QMVLTSIDCP
TCGRKMGIRT ASTGVFLGCS GYALSPKERC KTTINLVPEN EVLNVLEGDD AETNALRAKR
RCQKCGTAMD SYLIDPKRKL HVCGNNPTCD GYEIEEGEFR IKGYDGPIVE CEKCGSEMHL
KMGRFGKYMA CTNDECKNTR KILRNGEVAP PKEDPVPLPE LPCEKSDAYF MLRDGAAGIF
LAANTFPKSR ETRAPLVEEL YRFRDRLPEK LRYLADAPQQ DPEGNKTVVR FSRKTKQQYV
AAEKDGKATG WSAFFVDGKW VEGKK
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