Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1826 |
Symbol | |
ID | 6484691 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 1792888 |
End bp | 1794879 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642737201 |
Product | RNase II stability modulator |
Protein accession | YP_002040953 |
Protein GI | 194444703 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 7.47991e-23 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTACGCA TGATGAAACA GATTCAGGAA CAAACGGCGC TAAATCCCCT TCACTCTCAC TGGCGTCTGG CTGATGACCG CAACGTGCTG TATCTCTCCC CGACAGGTGA AACGGATACA GAAAAAACGG TCGAGCTATC GCCGGAACAA GCCGGGCGTA TCCGGGAAAT AACGGCGATT ACGTCCAGTC TGCTGATAAC GTTGTTGATA GAAAAACAGG TTACCGCTGT GCACCTGGTA GGCCGTAAGA TTAATAACCG TGAATGGGCT GGCAGCCTGG CAACCTGGCC TGATACGCCT GCCGTCGCGC CAACGCAGGC GCAGGAACTC TCTTTTGCCG AGCAAATCGT ATCAGAAGCC AACTCAGTCA TTGCGATACT GGATAGTCGG GGAAAAATCT GTCGATTTAA TCGGTTATGC GAAGAGTACA CGGGCTTAAA AGAGCGAGAT GTAATTGGTC AAAGCGTCTT TAAATTATTT ATGAGTCGCC GGGAGGCGGT TGCCTCCCGG CACTACATTG AGAATTTTTT TCGCAATGTC AATGCCTATG AAATCGAACG CTGGATAAAG ACTCGTAAAG GTCAACGCCT GTTCTTATTT CGTAATAAAT TTGTCCATAA CGGTAGCGGA AAAAACGAAA TTTTCCTGAT CTGCGCAGGC ACGGATATCA CCGAAGAAAG GCGGACTCAG GAGCGTTTAC GCATACTGGC GAATACAGAC ACCGTCACCG GCCTGCCCAA TCGCAATGCT ATTCATGAAT TTATTAATCA TGCTATTGCC TCGGCTGGCG AGTCGCAGGT GGGTATCGTT TATCTCGATC TGGATAATTT CAAGAAAATT AATGACGCCT ATGGGCATAT GTTTGGCGAT CAGCTCTTAC AGGCCGTTTC GCTGGCGCTG TTGAGTTGTC TGGAGGAAGA TCAATTGCTG GCCAGACTGG GGGGAGATGA ATTCATTGTC CTCGCTGCCC ATACGTCTCA GGCCGCGCTG GAAGCAGTAG CCTCACGAAT CCTTACCCGT CTGCGGCAAC CGTTTCGTAT TGGACTCATT GAAGTTTACA CGGGATGCGC CATTGGCATT TCGTTGGCCC CCCGGCACGG ACAGGACAGC GAAAGTCTCA TTCGCACTGC CGACACCGCA ATGTATAACG CCAAAGAAGG CGGCCGCGGT CAGTTCTGCG TTTTTTCGCC GGAAATGAAT CAGCGCGTAT TTGACTATCA CTGGCTGGAT ACAAACCTGC GAAAAGCGCT GGAAAACGAC CAGTTACTTA TTCACTATCA GCCCAAAATT ACCTGGCGCG GCGAAGTACG TAGCCTGGAA GCGCTGGTAC GCTGGCAATC GCCGGAACGC GGATTAATTC CGCCGCTGGA GTTCATCTCA TACGCCGAAG AGTCAGGACT CATCGTCCCG CTGGGCCGCT GGGTGATTCT GGATGTAGTT CGCCAGATTG CGAAATGGCG CGATAAGGGG ATTAACTTGC GCGTAGCCGT TAACTTTTCG GCGCGACAAC TGGCCGACCA GACGCTTTTT ACTGCGCTTA AACAGGCTTT GTACGATCTG AATTTTGAGT ATTGCCCAAT CGATGTCGAG CTAACGGAAA GCTGCCTGAT CGAAAACGAC ACGCTGGCGC TATCGGTTAT CCAGCAATTT AGTCAGCTCG GCGCCCAGAT TCATCTGGAT GATTTTGGCA CAGGGTATTC TTCGCTTTCT CAACTCGCCC GGTTCCCTAT TGATGCCGTT AAACTGGATC AGGCTTTCGT CAGAGATATC CATAAGCAAC CGCTGTCGCA ATCTCTGGTT AGGGCGATTG TCGCGGTGGC TCAGGCGCTA AATTTACAAG TGATTGCCGA AGGTGTAGAA AATGCTAAAG AAGATGCCTT CCTGACAAAA AACGGCGTCA ATGAACGACA GGGCTTTTTA TTCGCCAAAC CTATGCCCGC CGTTTCTTTT GAACGCTGGT ACAAACGTTA TCAGACGAAA AAAATGCGTT AA
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Protein sequence | MVRMMKQIQE QTALNPLHSH WRLADDRNVL YLSPTGETDT EKTVELSPEQ AGRIREITAI TSSLLITLLI EKQVTAVHLV GRKINNREWA GSLATWPDTP AVAPTQAQEL SFAEQIVSEA NSVIAILDSR GKICRFNRLC EEYTGLKERD VIGQSVFKLF MSRREAVASR HYIENFFRNV NAYEIERWIK TRKGQRLFLF RNKFVHNGSG KNEIFLICAG TDITEERRTQ ERLRILANTD TVTGLPNRNA IHEFINHAIA SAGESQVGIV YLDLDNFKKI NDAYGHMFGD QLLQAVSLAL LSCLEEDQLL ARLGGDEFIV LAAHTSQAAL EAVASRILTR LRQPFRIGLI EVYTGCAIGI SLAPRHGQDS ESLIRTADTA MYNAKEGGRG QFCVFSPEMN QRVFDYHWLD TNLRKALEND QLLIHYQPKI TWRGEVRSLE ALVRWQSPER GLIPPLEFIS YAEESGLIVP LGRWVILDVV RQIAKWRDKG INLRVAVNFS ARQLADQTLF TALKQALYDL NFEYCPIDVE LTESCLIEND TLALSVIQQF SQLGAQIHLD DFGTGYSSLS QLARFPIDAV KLDQAFVRDI HKQPLSQSLV RAIVAVAQAL NLQVIAEGVE NAKEDAFLTK NGVNERQGFL FAKPMPAVSF ERWYKRYQTK KMR
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