Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1819 |
Symbol | sapD |
ID | 6486598 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 1783522 |
End bp | 1784514 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642737195 |
Product | peptide ABC transporter ATP-binding protein SapD |
Protein accession | YP_002040947 |
Protein GI | 194446543 |
COG category | [V] Defense mechanisms |
COG ID | [COG4170] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0000000000000174818 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCCGTTAC TGGATATCCG CAATCTCACC ATTGAATTTA AAACCAGCGA AGGTTGGGTA AAAGCGGTCG ATCGCGTCAG TATGACATTA AGCGAAGGTG AAATTCGCGG CCTGGTAGGT GAATCGGGTT CCGGAAAGAG CTTGATTGCT AAAGCTATTT GCGGCGTCGC GAAAGACAAC TGGCGAGTCA CTGCCGACCG TATGCGTTTT GATGATATCG ATCTGCTGCG CCTCTCCTCA CGTGAACGGC GTAAGCTGGT CGGACATAAT GTGTCGATGA TCTTCCAGGA GCCGCAGTCG TGCCTTGATC CTTCCGAACG CGTCGGCCGC CAGTTAATGC AAAATATTCC CGCCTGGACC TATAAAGGCC GCTGGTGGCA GCGTTTAGGC TGGCGTAAAC GGCGTGCAAT TGAATTACTG CACCGGGTGG GAATTAAAGA TCATAAAGAC GCGATGCGCA GTTTTCCCTA TGAACTGACC GATGGTGAGT GTCAGAAAGT TATGATCGCT ATCGCGCTGG CGAATCAACC GCGACTCCTG ATCGCTGATG AACCCACCAA CTCAATGGAA CCAACGACGC AGGCGCAAAT TTTTCGCCTG CTGACCCGAC TGAATCAAAA CAGTAATACC ACCATTCTGT TGATTAGCCA CGACCTGCAA ATGCTGAGTC AGTGGGCTGA TAAAATCAAC GTTTTATACT GCGGCCAGAC GGTAGAAACC GCGCCAAGTA AAGATCTGGT GACGACGCCA CATCATCCTT ATACGCAGGC GCTTATCCGC GCGATTCCGG ATTTTGGCAG CGCGATGCCG CATAAAAGCC GTCTGAATAC GCTGCCAGGC GCGATCCCGC TACTGGAGCA GTTACCGATA GGTTGTCGTC TGGGGCCACG CTGCCCTTAC GCGCAACGAG AATGCATTAT CACGCCACGC TTAACCGGCG CGAAAAATCA TCTCTATGCC TGTCATTTTC CGCTGAATAT GGAGAGAGAG TGA
|
Protein sequence | MPLLDIRNLT IEFKTSEGWV KAVDRVSMTL SEGEIRGLVG ESGSGKSLIA KAICGVAKDN WRVTADRMRF DDIDLLRLSS RERRKLVGHN VSMIFQEPQS CLDPSERVGR QLMQNIPAWT YKGRWWQRLG WRKRRAIELL HRVGIKDHKD AMRSFPYELT DGECQKVMIA IALANQPRLL IADEPTNSME PTTQAQIFRL LTRLNQNSNT TILLISHDLQ MLSQWADKIN VLYCGQTVET APSKDLVTTP HHPYTQALIR AIPDFGSAMP HKSRLNTLPG AIPLLEQLPI GCRLGPRCPY AQRECIITPR LTGAKNHLYA CHFPLNMERE
|
| |