| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1804 |
|---|
| Symbol | |
|---|
| ID | 6485109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 1770156 |
|---|
| End bp | 1770884 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642737180 |
|---|
| Product | murein peptide amidase A |
|---|
| Protein accession | YP_002040932 |
|---|
| Protein GI | 194446019 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2866] Predicted carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.000928134 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTCA CCCGCCCCCG TGCCGAGCGC GGCGCATTTC CGCCAGGCAC TGAACATTAT
GGACGTTCGC TACTTGGCGC GCCGCTAATC TGGTTTCCGG CGCCTGCCGC CGATCGCGAA
AGCGGCCTGA TACTGGCTGG CACCCACGGG GATGAAACCT CATCCGTGGT GACGCTCTCC
TGTGCGTTAC GCACCTTAAA TCCAACCCTT CGCCGTCATC ATGTCGTACT TGCCGTTAAT
CCTGATGGCT GTCAACTGGG GTTAAGGGCA AATGCGAATG GCATTGATCT AAACCGTAAC
TTTCCCGCCG CCAACTGGAA AGCGGGTGAG ACAGTTTATC GCTGGAATAG CCGCGCGCAA
GAGCGTGATG TCGTGCTGCT AACCGGCGAC CATCCCGGCT CAGAACCGGA AACCCAGGCG
CTTTGCCAGT TAATTCATCG ACTCCAACCC GCCTGGGTCG TCTCTTTTCA CGATCCGCTA
GCCTGCATTG AAGATCCACG TCGCAGCGAG CTAGGCGAGT GGCTGGCCGA TGCGTTTGCG
TTGCCGCTGG TGACCAGCGT AGGTTACGAA ACGCCCGGTT CGTTTGGCAG CTGGTGCGCC
GACCTCAACC TGCACTGCAT TACCGCCGAG TTTCCCCCTG TTTCCGCCGA TGAAGCCAGC
GAAAAATACT TGCTGGCGAT GTCGAATCTG CTCCGCTGGC ATCCTAAAGA TGGAGTTGAC
CCGTCGTAA
|
|---|
| Protein sequence | MTVTRPRAER GAFPPGTEHY GRSLLGAPLI WFPAPAADRE SGLILAGTHG DETSSVVTLS
CALRTLNPTL RRHHVVLAVN PDGCQLGLRA NANGIDLNRN FPAANWKAGE TVYRWNSRAQ
ERDVVLLTGD HPGSEPETQA LCQLIHRLQP AWVVSFHDPL ACIEDPRRSE LGEWLADAFA
LPLVTSVGYE TPGSFGSWCA DLNLHCITAE FPPVSADEAS EKYLLAMSNL LRWHPKDGVD
PS
|
|---|
| |