Gene SNSL254_A1801 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1801 
Symbol 
ID6483981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp1766303 
End bp1767208 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content55% 
IMG OID642737177 
Productregulatory protein LysR 
Protein accessionYP_002040929 
Protein GI194444641 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0384326 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value0.0215354 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAAGC TGGAAGCGAT GCAGGTCTAT GTTTGCGTGG TGGATACCCA TAGTTTTATC 
AGAGCCGCCG AAGTGCTGGG CGTGCCGCGC TCAACGGTAT CGCGGGTGGT TAAAGAACTG 
GAATCCTGGC TTAAGATTCA GCTTTTGCAA CGTACAACCC GCAAACTTAG CGTGACCGCA 
GAGGGGCGGC GTTACTACGA AGAGTGTAAA AGAGTACTGG CAGATATCGC GGCCATGGAG 
TCGTCATTTC CCGGCCGGGC AGCACAACCC AAAGGGCGTT TTAAAGTGGG GATGCCGCAA 
TCTCTCGCCC GGCATTGCAT TATTCCTACG CTCCCGGCCT TTTTGCGCCA GTATCCGGAG 
CTGGAGCTGA TACTTTGTTC CAGCGATAGC GTGGAGGATA TTATCCTGCA AGGGTATGAC 
TGCGTGATTC GGGCCGGCAG GATCGATGAT TCCACCACGC TGGTTGCCCG TCCGCTCGCC 
AGTTTTAACT GGGTGATAGC AGCATCGCCC ACTTACATTG AGCGTTACGG TAGCCCTGAA 
AATTTAGATG ATCTGCAAAA ACACCATGCG GTCGGCTACC TGAACCACCG CACCGGGCGT 
ACCACCGACT GGTTTTTTAC GCGTGAAGGG AAGGATTACG CGATGCGGGT GCAGGAGACG 
CTGGTTGTCG ATGATACGGA CGCTTATATT CAGGCCGGAA TACAGGGACT GGGGTTAATT 
CGCGTCGCCA GCTATCTGGT TGCGCCGTAT CTGCACAGCG GGGCGCTGGT GACCTGCATG 
GACAACCATT CTTACGATTT GCCGCTTGCG CTGGTCTATC CGCAAAACAG GTTTCTGCCG 
CCTGCGGTAC GCGCTTTTTA TGACTGGTGC AAAACGGCGC TGAGCCAGCC GGAGCCTCTT 
TGCTAA
 
Protein sequence
MDKLEAMQVY VCVVDTHSFI RAAEVLGVPR STVSRVVKEL ESWLKIQLLQ RTTRKLSVTA 
EGRRYYEECK RVLADIAAME SSFPGRAAQP KGRFKVGMPQ SLARHCIIPT LPAFLRQYPE 
LELILCSSDS VEDIILQGYD CVIRAGRIDD STTLVARPLA SFNWVIAASP TYIERYGSPE 
NLDDLQKHHA VGYLNHRTGR TTDWFFTREG KDYAMRVQET LVVDDTDAYI QAGIQGLGLI 
RVASYLVAPY LHSGALVTCM DNHSYDLPLA LVYPQNRFLP PAVRAFYDWC KTALSQPEPL 
C