Gene SNSL254_A1798 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1798 
Symbol 
ID6482791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp1764353 
End bp1765066 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content57% 
IMG OID642737174 
Productoxidoreductase 
Protein accessionYP_002040926 
Protein GI194443014 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0401257 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value0.0380539 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTAT TTCGCAACAA ATCTGTACTG GTTTTAGGGG GAAGTCGTGG TATCGGCGCG 
GCTATTGTAC GACGCTTTAG CGCTGACGGC GCATCGGTCG TTTTCAGCTA CGCCGGATCG
CGTGAAGCTG CCGAAAAACT GGCAGCGGAA ACCGGAAGCA CCGCCATTCA GACGGATAGC
GCCGATCGTG ATGCCGTCAT CAGCCTCGTG CGTGAGTACG GACCGCTGGA TATTCTGGTC
GTCAATGCGG GCGTGGCTCT CTTCGGCGAT GCGCTGGAAC AAGATAGCGA TGCGATAGAT
CGTTTGTTCC GCATTAATAT CCATGCGCCT TACCATGCGT CAGTCGAAGC AGCCCGCCAC
ATGCCGGAAG GTGGACGCAT TATTATTATC GGTTCCGTGA ATGGCGATCG GATGCCCGTA
CCGGGAATGG CCGCGTACGC CGCCAGTAAA TCAGCCCTAC AAGGGCTGGC GCGCGGCTTA
GCCCGTGATT TTGGCCCCCG CGGGATTACA ATAAATGTAG TGCAGCCAGG CCCCATTGAT
ACCGACATCA ATCCGGAAAA TGGCCCAATG AAAGAGCTGA TGCACAGTTT CATGGCGATC
AAACGACACG GAAGACCTGA AGAAGTGGCT GGAATGGTGG CATGGCTTGC CGGTCCGGAA
GCCTCTTTCG TCACCGGTGC GATGCACACC ATCGATGGTG CCTTCGGCGC CTGA
 
Protein sequence
MTLFRNKSVL VLGGSRGIGA AIVRRFSADG ASVVFSYAGS REAAEKLAAE TGSTAIQTDS 
ADRDAVISLV REYGPLDILV VNAGVALFGD ALEQDSDAID RLFRINIHAP YHASVEAARH
MPEGGRIIII GSVNGDRMPV PGMAAYAASK SALQGLARGL ARDFGPRGIT INVVQPGPID
TDINPENGPM KELMHSFMAI KRHGRPEEVA GMVAWLAGPE ASFVTGAMHT IDGAFGA