Gene SNSL254_A1788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1788 
Symbol 
ID6482540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp1754890 
End bp1755576 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content54% 
IMG OID642737164 
ProductB3/4 domain protein 
Protein accessionYP_002040916 
Protein GI194446781 
COG category[S] Function unknown 
COG ID[COG3382] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.00972614 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value0.283564 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTCTA TGTTACCGTC AATCAGCCCG GAACTGGCCC GTATCGCTCC CAGCTTTCGT 
GCATTAAGTA TTAATGTTAT TGCCGCTCCG ATTCGCGATG CGCAGGTCGG AGAAATCGCG 
CTAAAAGAGG CCTGTCAGGC CGTAATTAAC GGCCAACCGG CGTGGGCACA GGCGCATATA 
GACGCCTGGA ATGCGGTGTT TAAAGCATTC GGCGCAAAAC CAAAGCGCAC CCCCTGCTCG 
GCTGAAGCGC TACGAAAACG CGTGTTGAAG GATGGAACAA TGGCGGCGCT GGATCCGGTC 
GTTGATCTTT ATAACGCGGT GAGCCTGCGC TATGCCGTAC CGGTAGGCGG CGAAAATAGC 
GCGGCTTATT GTGGATCGCC GCGGCTGGTT TTCGCAGACG GTAGTGAAAC ATTTGATACT 
CTGAAAGAAG GACAACCCGC CACCGAGTCG CCAGAACCGG GCGAAGTTAT CTGGCGCGAT 
GACAGAGGCG TCACCTGTCG GCGCTGGAAC TGGCGTCAGG GAGTACGTAC CCGACTAAGC 
GCTTCAGATA AAACGATGTG GTTTATCCTT GAAAGCTTGC CGGAAATGCC GGTTGATGAA 
TTGTACGCGG CAGGAAACAT GCTGACTGAC GGCCTTGAAA AAATGATGCC AGGTTTACGT 
TTTGAATCCA CGTTGATAGG TGTTTGA
 
Protein sequence
MSSMLPSISP ELARIAPSFR ALSINVIAAP IRDAQVGEIA LKEACQAVIN GQPAWAQAHI 
DAWNAVFKAF GAKPKRTPCS AEALRKRVLK DGTMAALDPV VDLYNAVSLR YAVPVGGENS 
AAYCGSPRLV FADGSETFDT LKEGQPATES PEPGEVIWRD DRGVTCRRWN WRQGVRTRLS 
ASDKTMWFIL ESLPEMPVDE LYAAGNMLTD GLEKMMPGLR FESTLIGV