| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1758 |
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| Symbol | hrpA |
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| ID | 6483805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 1727687 |
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| End bp | 1731589 |
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| Gene Length | 3903 bp |
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| Protein Length | 1300 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642737137 |
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| Product | ATP-dependent RNA helicase HrpA |
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| Protein accession | YP_002040889 |
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| Protein GI | 194446497 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.199323 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAAC AATCTACGTT GACGCTTCAG GTGTTACAGC AGCGGCTGGA TGCACTGATG
CTGCGCGACA AACAGCGCTT TGCGCGCCGC CTGCATGGCG TAAAGAAAGT AAAAAATCCT
GATGCGCAAC AGGCCATTTT CCAGACGATG GCGAAAGAAA TTGAACAGGC TGCGGCGCAA
GTCGCCCTCC GCGAAGCGGC GCGCCCCTCA ATCACTTATC CGCAAAATCT GCCTGTTAGC
CAGAAGAAAC AGGACATTCT GGAAGCGGTC CGCGATCATC AGGTAGTGAT CGTGGCAGGG
GAAACCGGTT CCGGTAAAAC CACCCAGTTG CCGAAAATTT GTATGGAGCT GGGACGCGGA
ATTAAAGGAC TTATTGGACA TACTCAGCCG CGTCGCCTGG CGGCGCGCAC CGTTGCTAAC
CGCATTGCCG AAGAGTTGCA AACGGAGCCT GGCGGCTGCA TCGGCTATAA AGTTCGTTTC
AGCGATCATG TCAGTAGCAA CACCATGGTC AAACTGATGA CGGACGGTAT CCTGCTGGCG
GAAATCCAGC AGGACAGGCT ATTGATGCAG TACGACACCA TCATTATTGA TGAAGCGCAT
GAACGCAGCC TGAATATTGA CTTCTTGCTC GGCTATCTGA AAGAGCTTCT GCCGCGTCGC
CCCGATCTGA AAGTGATTAT TACCTCTGCG ACCATCGACC CGGAACGCTT CTCGCGCCAC
TTTAATAACG CGCCGATTAT CGAAGTCTCT GGCCGAACGT ATCCCGTAGA GGTTCGTTAT
CGCCCCATCG TGGAAGAGGC TGACGACACT GAACGCGATC AGCTACAGGC AATTTTCGAC
GCTGTTGATG AACTGGGGCG TGAAAGTCCC GGCGATATCC TGATTTTTAT GAGCGGAGAG
CGGGAAATCC GCGATACCGC CGACGCCCTG AACAAGCTGA ACTTACGGCA TACCGAAGTG
TTGCCGCTGT ATGCACGCTT GTCGAACAGC GAACAGAACC GCGTTTTCCA GTCGCACAGC
GGACGCCGTA TCGTGCTGGC GACTAACGTG GCGGAAACCT CGCTGACGGT GCCGGGTATC
AAATATGTGA TCGATCCTGG CACTGCGCGC ATCAGCCGCT ACAGCTACCG CACTAAAGTG
CAGCGCCTGC CGATTGAACC GATCTCACAG GCTTCCGCCA ACCAGCGTAA AGGGCGTTGC
GGGCGCGTAT CGGAAGGGAT TTGCATTCGT CTGTATTCGG AAGATGACTT TTTGTCACGT
CCGGAATTTA CCGACCCGGA AATTCTACGT ACCAACCTGG CGTCGGTTAT TTTGCAGATG
ACCGCCCTGG GGCTGGGTGA CATTGCCGCC TTCCCGTTTG TCGAAGCGCC GGATAAGCGC
AATATTCAGG ATGGCGTGCG TTTGTTGGAA GAGCTGGGGG CGATTACCGC CGACGAACAG
CAAACGGCAT ATAAGCTGAC GCCACTGGGC CGACAATTAT CCCAGTTGCC GGTCGACCCG
CGCCTGGCGC GTATGGTTCT GGAAGCGCAA AAACATGGCT GTGTGCGCGA AGCGATGATC
ATTACTTCCG CACTCTCTAT TCAGGATCCG CGCGAGCGCC CAGTGGATAA GCAGCAGGCT
TCCGATGAGA AACACCGGCG TTTCCATGAT AAGGAGTCCG ATTTTCTGGC GTTTGTTAAC
CTGTGGAATT ACCTCGGCGA GCAACAAAAG GCCCTGTCGT CGAATCAATT CCGCCGTCTG
TGTCGCACCG ACTATCTGAA CTATTTACGC GTGCGTGAGT GGCAGGATAT CTATACCCAA
CTGCGTCAGG TGGTAAAAGA ACTGGGGATT CCGGTAAACA GCGAACCCGC AGAGTACCGG
GAAATTCACG TTGCGTTGTT AACGGGACTG TTGTCGCATA TCGGGATGAA AGATGTCGAT
AAACAAGAGT ACACCGGCGC GCGTAACGCC CGATTCTCTA TTTTCCCCGG TTCCGGTTTA
TTCAAAAAAC CGCCGAAATG GACAATGGTC GCAGAACTGG TGGAGACCAG CCGTTTGTGG
GGGCGCATCG CTGCCCGCAT TGAGCCAGAA TGGGTGGAAC CGGTAGCCCA GCACCTGATT
AAACGTTCAT ATAGCGAACC GCACTGGGAG CGGGCGCAAG GCGCGGTGAT GGCGACGGAA
AAGGTTACTG TCTACGGTCT GCCGATTGTC GCCGCGCGCA AAGTGAATTA CAGCCAGATT
GACCCGGCGT TGTGTCGCGA GTTGTTCATC CGCCATGCGC TGGTGGAGGG GGACTGGCAA
ACCCGTCATG CCTTCTTCCG TGAGAATCTA AAATTGCGTG CGGAAGTCGA GGAACTTGAG
CACAAATCTC GCCGCCGCGA TATCCTGGTG GATGACGATA CCCTGTTTGA GTTTTATGAC
CAGCGTATTA GCCATGACGT TATTTCCGCC CGCCACTTTG ATAGTTGGTG GAAAAAAATC
AGCCGCGAGA CGCCGGATCT GCTCAACTTT GAAAAAAGTA TGTTGATTAA AGAAGGCGCG
GAAAAAATCA GCAAACTGGA TTACCCGAAT TTCTGGCACC AGGGCAATCT CAAGCTGCGT
TTGAGCTATC AGTTTGAACC GGGCGCGGAT GCTGACGGCG TGACCGTCCA TATTCCGTTG
CCGCTACTTA ACCAGGTTGA CGAGAGCGGT TTTGAATGGC AGATCCCGGG GCTGCGCCGT
GAATTAGTTA TTGCGCTGAT TAAATCGTTG CCAAAACCGG TACGTCGCAA CTTTGTTCCG
GCGCCAAACT ATGCTGAAGC GTTTTTAGGT CGCGTAACGC CGCTGGAGCT GCCGCTGCTG
GACGCTCTGG AGCGTGAACT GCGCCGGATG ACCGGCGTCA CGGTCGATCG GGAAGACTGG
CATTGGGATC AGGTGCCCGA GCATCTGAAA ATCACGTTTC GCGTGGTGAA TGACAAAAAC
AAGAAACTGC AGGAAGGGCG TTCGCTCGCC GAGCTTAAAA ATGCGCTGAA AGGCAAAGTG
CAGGAGACGC TCTCGGCGGT GGCGGATGAC GGCATCGAGC AGAGCGGGCT GCATATCTGG
AGTTTCGGCG AGCTGCCGGA AAGCTACGAA CAGAAACGCG GTAATTATAA AGTGAAGGCG
TGGCCGGCGT TAGTGGATGA GCGTGACAGC GTCGCTATCA AATTGTTTGA TAATCCGCTG
GAACAACAAC AGGCGATGTG GTGCGGTTTA CGCCGTCTGT TGTTGCTCAA TATTCCTTCA
CCGATTAAGT ATCTGCATGA GAAATTGCCG AATAAAGCCA AGCTGGGGCT GTACTTTAAC
CCGTACGGCA AAGTACTGGA GTTGATTGAT GACTGTATCG CCTGCGGGGT AGATAAGCTG
ATAGATGCCA ACGGCGGACC GGTGTGGAAC GAAGCAGGTT TCACCGCGCT GCACGAAAAG
GTACGCGCCG AGCTGAATGA TACTGTGGTG GATATCGCGA AGCAGGTTGA GCGGATCCTG
ACGACCGTAT TCAATATCAA TAAGCGTCTG AAAGGGCGGG TGGATATGAG CATGGCGTTG
GGGCTTTCCG ATATCAAGGC GCAGATGAAC GGCCTGGTAT ACCGTGGTTT TGTGACTGGC
AACGGCTTTA AACGTCTCGG CGATACGCTG CGTTATCTGC AGGCAATTGA AAAGCGGCTG
GAGAAACTGG CTGTCGATCC GCACCGCGAT CGGGCGCAAA TGCTGAAAGT CGAAAGCGTC
CAGCAGGCGT GGCAACAATG GATAAATAAA CTGCCTCCAG CGCGTCGCGA AGATGATGAT
GTTAAAGAGA TCCGTTGGAT GATTGAAGAA CTGCGTGTCA GTTATTTCGC CCAACAGCTC
GGTACGCCTT ATCCTATTTC CGATAAGCGT ATTTTACAGG CCATGGATCA GATTACGGCC
TAA
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| Protein sequence | MTEQSTLTLQ VLQQRLDALM LRDKQRFARR LHGVKKVKNP DAQQAIFQTM AKEIEQAAAQ
VALREAARPS ITYPQNLPVS QKKQDILEAV RDHQVVIVAG ETGSGKTTQL PKICMELGRG
IKGLIGHTQP RRLAARTVAN RIAEELQTEP GGCIGYKVRF SDHVSSNTMV KLMTDGILLA
EIQQDRLLMQ YDTIIIDEAH ERSLNIDFLL GYLKELLPRR PDLKVIITSA TIDPERFSRH
FNNAPIIEVS GRTYPVEVRY RPIVEEADDT ERDQLQAIFD AVDELGRESP GDILIFMSGE
REIRDTADAL NKLNLRHTEV LPLYARLSNS EQNRVFQSHS GRRIVLATNV AETSLTVPGI
KYVIDPGTAR ISRYSYRTKV QRLPIEPISQ ASANQRKGRC GRVSEGICIR LYSEDDFLSR
PEFTDPEILR TNLASVILQM TALGLGDIAA FPFVEAPDKR NIQDGVRLLE ELGAITADEQ
QTAYKLTPLG RQLSQLPVDP RLARMVLEAQ KHGCVREAMI ITSALSIQDP RERPVDKQQA
SDEKHRRFHD KESDFLAFVN LWNYLGEQQK ALSSNQFRRL CRTDYLNYLR VREWQDIYTQ
LRQVVKELGI PVNSEPAEYR EIHVALLTGL LSHIGMKDVD KQEYTGARNA RFSIFPGSGL
FKKPPKWTMV AELVETSRLW GRIAARIEPE WVEPVAQHLI KRSYSEPHWE RAQGAVMATE
KVTVYGLPIV AARKVNYSQI DPALCRELFI RHALVEGDWQ TRHAFFRENL KLRAEVEELE
HKSRRRDILV DDDTLFEFYD QRISHDVISA RHFDSWWKKI SRETPDLLNF EKSMLIKEGA
EKISKLDYPN FWHQGNLKLR LSYQFEPGAD ADGVTVHIPL PLLNQVDESG FEWQIPGLRR
ELVIALIKSL PKPVRRNFVP APNYAEAFLG RVTPLELPLL DALERELRRM TGVTVDREDW
HWDQVPEHLK ITFRVVNDKN KKLQEGRSLA ELKNALKGKV QETLSAVADD GIEQSGLHIW
SFGELPESYE QKRGNYKVKA WPALVDERDS VAIKLFDNPL EQQQAMWCGL RRLLLLNIPS
PIKYLHEKLP NKAKLGLYFN PYGKVLELID DCIACGVDKL IDANGGPVWN EAGFTALHEK
VRAELNDTVV DIAKQVERIL TTVFNINKRL KGRVDMSMAL GLSDIKAQMN GLVYRGFVTG
NGFKRLGDTL RYLQAIEKRL EKLAVDPHRD RAQMLKVESV QQAWQQWINK LPPARREDDD
VKEIRWMIEE LRVSYFAQQL GTPYPISDKR ILQAMDQITA
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