Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1747 |
Symbol | |
ID | 6484831 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 1717646 |
End bp | 1718872 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 642737127 |
Product | secreted effector protein |
Protein accession | YP_002040879 |
Protein GI | 194442907 |
COG category | [I] Lipid transport and metabolism [R] General function prediction only |
COG ID | [COG3240] Phospholipase/lecithinase/hemolysin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.343873 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 0.229892 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCATTGA GTGTTGGACA GGGTTATTTC ACATCATCTA TCAGTTCTGA AAAATTTAAT GCGATAAAAG AAAGCGTACG CCTTCCGGAA TTAAGTTTAT GGGAGAAAAT CAAAGCATAT TTCTTTACCA CCCACCATGC AGAGGCGCTC GAATGTATCT TTAATCTTTA CCACCATCAG GAACTGAATC TAACACCGGT ACAGGTTCGC GGAGCCTACA TCAAACTTCG AGCCTTAGCG TCTCAGGGAT GTAAAGAACA GTTTATTATA GAATCACAGG AACACGCCGA TAAGTTGATT ATTAAAGATG ATAATGGTGA AAATATTTTA TCTATTGAGG TTGAATGTCA TCCGGAAGCT TTTGGTCTTG CCAAAGAAAT CAATAAATCA CATCCCAAGC CCAAAAATAT TTCTTTGGGT GATATTACCA GACTGGTATT TTTTGGCGAC AGCTTGTCTG ACTCCTTAGG GCGTATGTTT GAAAAAACAC ATCATATCTT ACCCTCCTAT GGTCAATACT TTGGCGGAAG GTTTACTAAT GGATTTACCT GGACTGAGTT TTTATCATCT CCACACTTCT TAGGTAAAGA GATGCTTAAT TTTGCTGAAG GGGGAAGTAC ATCGGCAAGC TATTCCTGCT TTAATTGCAT CGGTGACTTT GTATCAAATA CGGACAGACA AGTCGCATCT TACACCCCTT CTCACCAGGA CCTGGCGATA TTTTTATTGG GGGCTAATGA CTATATGACA CTACACAAAG ATAATGTAAT AATGGTCGTT GAGCAACAAA TTGATGATAT TGAAAAAATA ATTTCCGGTG GAGTTAATAA TGTTCTGGTC ATGGGGATTC CCGATTTGTC TTTAACACCC TATGGCAAGC ATTCTGATGA AAAAAGAAAA CTTAAGGATG AAAGCATCGC TCACAATGCC CTGCTAAAAA CTAATGTTGA AGAATTAAAA GAAAAATACC CCCAGCATAA AATATGCTAT TACGAGACTG CCGATGCATT TAAGGTGATA ATGGAGGCGG CCAGTAATAT TGGTTATGAT ACGGAAAACC CTTATACTCA CCACGGCTAT GTACATGTTC CCGGGGCTAA AGACCCTCAG CTAGATATAT GTCCGCAATA CGTCTTCAAC GACCTTGTCC ATCCAACCCA GGAAGTCCAT CATTGTTTTG CCATAATGTT AGAAAGTTTT ATAGCTCATC ATTATTCCAC TGAATAA
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Protein sequence | MPLSVGQGYF TSSISSEKFN AIKESVRLPE LSLWEKIKAY FFTTHHAEAL ECIFNLYHHQ ELNLTPVQVR GAYIKLRALA SQGCKEQFII ESQEHADKLI IKDDNGENIL SIEVECHPEA FGLAKEINKS HPKPKNISLG DITRLVFFGD SLSDSLGRMF EKTHHILPSY GQYFGGRFTN GFTWTEFLSS PHFLGKEMLN FAEGGSTSAS YSCFNCIGDF VSNTDRQVAS YTPSHQDLAI FLLGANDYMT LHKDNVIMVV EQQIDDIEKI ISGGVNNVLV MGIPDLSLTP YGKHSDEKRK LKDESIAHNA LLKTNVEELK EKYPQHKICY YETADAFKVI MEAASNIGYD TENPYTHHGY VHVPGAKDPQ LDICPQYVFN DLVHPTQEVH HCFAIMLESF IAHHYSTE
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