Gene SNSL254_A1716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1716 
SymbolsifB 
ID6485151 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp1688533 
End bp1689483 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content38% 
IMG OID642737096 
Productsecreted effector protein 
Protein accessionYP_002040848 
Protein GI194444447 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.634988 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones80 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAATTA CTATCGGGAG AGGATTTTTA AAGAGTGAGA TGTTTTCTCA AAGTGCTATC 
TCTCAACGCT CCTTCTTTAC GTTACTATGG GAAAGGATTA AAGATTTTTT TTGTGACACG 
CAAAGATCCA CTGCCGATCA ATATATAAAG GAATTATGTG ATGTTGCCTC TCCGCCTGAC 
GCGCAACGTT TATTTGATTT ATTTTGCAAG TTATATGAAT TATCATCACC GTCATGCAGA 
GGAAATTTCC ATTTTCAGCA CTATAAAGAT GCTGAGTGTC AGTATACAAA TCTCTGTATT 
AAAGATGGCG AAGATATTCC GTTATGTATT ATGATACGTC AGGATCACTA CTATTATGAG 
ATAATGAATA GAACAGTGCT CTGTGTTGAT ACTCAGTCTG CCCACCTGAA AAGATATTCT 
GATATTAATA TAAAAGCTAG CACTTATGTT TGTGAACCGC TATGTTGCTT GTTCCCTGAG 
CGGTTACAAC TCTCGCTATC CGGCGGTATA ACATTTTCCG TTGACCTAAA AAATATAGAA 
GAGACGCTTA TCGCCATGGC AGAAAAGGGT AATTTATGTG ACTGGAAGGA ACAGGAAAGA 
AAAGCCGCCA TCTCCTCCAG GATTAATCTG GGCATCGCCC AGGCAGGTGT AACAGCTATT 
GACGACGCTA TCAAAAACAA AATAGCCGCA AAGGTTATTG AGAATACTAA CTTAAAGAAT 
GCAGCGTTTG AACCAAATTA TGCACAAAGC TCAGTTACTC AAATTGTTTA TTCATGTTTG 
TTTAAGAATG AGATACTAAT GAATATGCTG GAAGAAAGTT CCTCTCATGG CCTGCTATGT 
TTAAACGACC TTGCTGAATA TGTAGCGCTA CAAGTTCATA ACAGCCTTTT TTCTGAAGAT 
TTATCTTCAC TCGTTGAAAC AACAAAAAAT GAGGCTCATC ACCAGAGTTG A
 
Protein sequence
MPITIGRGFL KSEMFSQSAI SQRSFFTLLW ERIKDFFCDT QRSTADQYIK ELCDVASPPD 
AQRLFDLFCK LYELSSPSCR GNFHFQHYKD AECQYTNLCI KDGEDIPLCI MIRQDHYYYE 
IMNRTVLCVD TQSAHLKRYS DINIKASTYV CEPLCCLFPE RLQLSLSGGI TFSVDLKNIE 
ETLIAMAEKG NLCDWKEQER KAAISSRINL GIAQAGVTAI DDAIKNKIAA KVIENTNLKN 
AAFEPNYAQS SVTQIVYSCL FKNEILMNML EESSSHGLLC LNDLAEYVAL QVHNSLFSED 
LSSLVETTKN EAHHQS