| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1702 |
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| Symbol | |
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| ID | 6485612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 1670243 |
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| End bp | 1672363 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642737082 |
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| Product | putative TonB-dependent receptor yncD |
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| Protein accession | YP_002040834 |
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| Protein GI | 194445165 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.770108 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 0.940102 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTA TTTCCGTTAG ACAGCGACTT TATCCCGCCC TCTTATTGCC TCTGACCTTC
TCCCCGGTCC TTCAGGCCGC CAGCGCGTCC AATGAACAAA CCATGATAGT CACCGCAACG
CCGCAAACCG TATCCGAACT GGATACACCT GCCGCCGTTA GCGTCATTGA GGGAGAAGAC
ATGCGTCTGG CGACGCCGCG CGTTAATTTA TCTGAGTCTT TAACCAGCGT CCCGGGATTG
CAGGTGCAGA ACCGGCAGAA CTACGCGCAG GATCTGCAAA TCTCTATCCG TGGATTTGGC
TCGCGTTCCG CCTTTGGCGT GCGCGGCATT CGTCTGTATG TTGATGGCAT TCCCGCCACC
ATGCCGGATG GACAAGGCCA GATTTCGAAT ATTGATATTA ACAGCATACA AGACGTTGAA
GTGTTACGCG GCCCCTTCTC AGCGCTATAC GGCAATGCTT CCGGCGGCGT AATAAATGTC
ACCACCGAAA CCGGGAGACA GCCGCCCACC CTTGAGGCCA GCAGCTACTA CGGCAGTTAT
GGAAGCTGGC GCTATGGGCT AAAAGCCACG GGCGCGATGG GTGACGGCAC ACAGCCTGGC
GACGTGGATT ACACGGTATC AACTACCCGT TTCACCACCC ACGGCTACCG CGATCACAGC
GGCGCGCGAA AAAATCTGGC TAATGCCAAA CTGGGCGTGC GCCTTGACGA TGTCAGTAAA
CTCTCGCTGA TTTTTAATAG TGTGGACATT AAGGCGGACG ATCCCGGCGG ACTTACCGAA
TCTGAATGGA AAGCAGATCC GCAACAGGCG CCCCGCGCTG AACAGTACAA TACGCGTAAA
ACCATCAAAC AAACTCAGGC AGGATTGCGT TATGAACGTC AGCTCAGCGC GCAGGATGAT
ATCAGCGTGA TGGCCTACGC CGGAGAGCGG GAAACCACGC AATACCAGTC TATTCCCCTG
GTGGCACAGC TAAAACCGGC CCAGGCTGGC GGCGTAATTA CACTGCAACG CCACTATCAG
GGTATTGATT CCCGCTGGAC TCACCGGGGA GAATTAGGTG TGCCGGTCAC CTTCACTGGC
GGAGTAAACT ATGAAAACAT GAGCGAAAAC CGCAAGGGTT ACAATAACTT CCGTCTCAAC
AACGGCACCC CTGAGTTTGG GCATAAAGGC GATTTACGGC GGGATGAGCG TAACCTGATG
TGGAATGTCG ATCCTTATCT GCAAACCCAG TGGCAGCTTA CGCAAAAACT CTCGCTGGAT
GCTGGCGTGC GCTACAGTTC CGTGTGGTTC GATTCTAACG ATCACTATAT CGCGCCCGGC
AATGGCGATG ATAGCGGCGA CGCCAGCTAT CACCACTGGC TACCCGCCGG ATCGCTAAAA
TATGCGTTAA CTGACGCCTG GAATCTCTAT CTTGCTGCCG GTCGCGGATT TGAAACTCCC
ACTATCAATG AGCTTTCTTA TCGCGCTGAC GGCCAAAGCG GGTTCAACTT TGATCTCAAA
CCGTCGACCA ATGATACGGT GGAAGTCGGC AGTAAAACGC GGATTGGCAA TGGCTTGTTG
ACCGCCGCGT TATTTCAAAC CGATACCGAT GATGAAATTG TCGTCGCCAG TAGTATGGGA
GGACGCACTA CCTACAAAAA CGCGGGCAAA ACTCGCCGCC AGGGCGCAGA ACTCGCGTTG
GACCAGCGCT TCGCCGGCGA CTGGCGGGTG AAAGCATCAT GGACCTGGCT GGATGCGACC
TATCGCAGTA ACGTTTGTCA GGGGCAAAAC TGTGATGGAA ACCGAATGCC CGGCATCGCC
CGTAATATGG GATTCGCCTC ATTAGGTTTT ATCCCGGATG AGGGGTGGTA CGCCGGAACA
GATGTTCGGT ATATGGGCGA TATCATGGCC AATGATGAAA ATACCGCCAA AGCGCCTTCG
TATACCGTTG TTGGACTAAA TACAGGGTAT AAATTTAATT ACAGCCAGCT TACCGTCGAT
ATTTTTGGGC GGGTAGATAA TCTATTTGAT AAAGAATATA TCGGTTCGGT GATCGTTAAT
GAATCTAATG GCCGATATTA TGAGCCAGCG CCAGGGCGTA ACTATGGCGT GGGGATTAAT
CTGGCATGGC GATTTGAATA A
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| Protein sequence | MKIISVRQRL YPALLLPLTF SPVLQAASAS NEQTMIVTAT PQTVSELDTP AAVSVIEGED
MRLATPRVNL SESLTSVPGL QVQNRQNYAQ DLQISIRGFG SRSAFGVRGI RLYVDGIPAT
MPDGQGQISN IDINSIQDVE VLRGPFSALY GNASGGVINV TTETGRQPPT LEASSYYGSY
GSWRYGLKAT GAMGDGTQPG DVDYTVSTTR FTTHGYRDHS GARKNLANAK LGVRLDDVSK
LSLIFNSVDI KADDPGGLTE SEWKADPQQA PRAEQYNTRK TIKQTQAGLR YERQLSAQDD
ISVMAYAGER ETTQYQSIPL VAQLKPAQAG GVITLQRHYQ GIDSRWTHRG ELGVPVTFTG
GVNYENMSEN RKGYNNFRLN NGTPEFGHKG DLRRDERNLM WNVDPYLQTQ WQLTQKLSLD
AGVRYSSVWF DSNDHYIAPG NGDDSGDASY HHWLPAGSLK YALTDAWNLY LAAGRGFETP
TINELSYRAD GQSGFNFDLK PSTNDTVEVG SKTRIGNGLL TAALFQTDTD DEIVVASSMG
GRTTYKNAGK TRRQGAELAL DQRFAGDWRV KASWTWLDAT YRSNVCQGQN CDGNRMPGIA
RNMGFASLGF IPDEGWYAGT DVRYMGDIMA NDENTAKAPS YTVVGLNTGY KFNYSQLTVD
IFGRVDNLFD KEYIGSVIVN ESNGRYYEPA PGRNYGVGIN LAWRFE
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