| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1687 |
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| Symbol | |
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| ID | 6485900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 1651507 |
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| End bp | 1652595 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642737067 |
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| Product | outer membrane porin protein LC |
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| Protein accession | YP_002040819 |
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| Protein GI | 194443977 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 64 |
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| Fosmid unclonability p-value | 0.535168 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTTA AGTTAGTGGC AGTGGCAGTG ACTTCCCTGT TGGCAGCAGG CGTTGTAAAT
GCAGCCGAGG TATATAACAA AGACGGCAAT AAACTGGATC TGTACGGTAA AGTTCACGCT
CAGCATTATT TCTCTGATGA TAACGGAAGT GATGGTGACA AAACTTACGC GCGTCTGGGC
TTTAAAGGCG AAACTCAGAT CAACGATCAG TTAACCGGTT TTGGCCAGTG GGAATATGAA
TTCAAAGGCA ACCGTACTGA AAGCCAGGGC GCTGACAAAG ACAAAACCCG TCTGGCGTTT
GCTGGTCTGA AATTCGCTGA CTACGGTTCT TTCGACTACG GTCGTAACTA CGGCGTTGCT
TACGACATCG GCGCATGGAC CGACGTTCTG CCAGAGTTCG GTGGCGATAC CTGGACTCAG
ACTGACGTCT TCATGACTGG CCGTACTACT GGTGTTGCCA CCTACCGTAA CACCGATTTC
TTTGGCCTGG TTGAAGGTCT GAACTTTGCC GCGCAGTACC AGGGCAAAAA CGACCGTGAC
GGCGCATACG AGTCTAACGG CGACGGTTTC GGTCTGTCCG CAACGTATGA GTACGAAGGC
TTTGGCGTGG GTGCGGCCTA TGCGAAGTCT GACCGTACTA ACAACCAGGT GAAAGCAGCG
AGCAACCTGA ATGCTGCGGG TAAAAACGCT GAAGTCTGGG CTGCTGGTCT GAAATATGAT
GCGAACAACA TCTACCTGGC GACCACCTAC TCCGAAACGC TGAACATGAC CACCTTTGGT
GAAGATGCAG CGGGTGATGC GTTTATCGCG AATAAAACCC AGAACTTCGA AGCGGTTGCT
CAGTATCAGT TCGACTTCGG TCTGCGTCCG TCCATCGCTT ACCTGAAATC CAAAGGTAAA
AACCTGGGTA CTTACGGCGA CCAGGATCTG GTTGAGTACA TCGATGTCGG CGCAACCTAT
TACTTCAACA AAAACATGTC CACCTTCGTT GATTACAAAA TCAACCTGCT GGACGACAGC
GATTTCACCA AAGCGGCTAA AGTGTCTACT GACAACATCG TTGCTGTTGG TCTGAACTAC
CAGTTCTAA
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| Protein sequence | MKLKLVAVAV TSLLAAGVVN AAEVYNKDGN KLDLYGKVHA QHYFSDDNGS DGDKTYARLG
FKGETQINDQ LTGFGQWEYE FKGNRTESQG ADKDKTRLAF AGLKFADYGS FDYGRNYGVA
YDIGAWTDVL PEFGGDTWTQ TDVFMTGRTT GVATYRNTDF FGLVEGLNFA AQYQGKNDRD
GAYESNGDGF GLSATYEYEG FGVGAAYAKS DRTNNQVKAA SNLNAAGKNA EVWAAGLKYD
ANNIYLATTY SETLNMTTFG EDAAGDAFIA NKTQNFEAVA QYQFDFGLRP SIAYLKSKGK
NLGTYGDQDL VEYIDVGATY YFNKNMSTFV DYKINLLDDS DFTKAAKVST DNIVAVGLNY
QF
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