Gene SNSL254_A1653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1653 
Symbol 
ID6483268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp1615916 
End bp1616707 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content47% 
IMG OID642737038 
Productputative regulatory protein 
Protein accessionYP_002040790 
Protein GI194442574 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value0.989828 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGCTA CCGGCGGTTG CTTCTCTTTA TCATGCACGG TAATTAATTA TCACGATCAC 
CAGCGCCAGG ATGGTATGCT AAATCCATTC AAAATCCCCT GGATATGGAT TGGAGGGCGC 
ATGGTTATAC CTGAGGTCAG GCAGGAGAGG CTCTATCAGA AGATAGCCAA CCTCATCATT 
AAGCTGATCA ATGATAATAT TTTTCCACCG GGAACTTTTT TACCGCCAGA ACGCGAACTG 
GCAAAACAGC TTGGCGTGAG CCGCGCCTCC TTGCGAGAAG CCCTTATTGT ACTGGAGATC 
TCGGGATGGA TCGTGATTCA GTCCGGTAAT GGGGTTATCG TTTCAGATAA AAAACACCTT 
GCCAGCGACT ATACCATTGA AGAAATTCTC TCTACTCGCG AGCTGGTCGA TAGCCATTGT 
GCGCGCTTAG CCGCACAAAA CGATAACGTT GACGTCATCA ACCAAATAGA GGCGATTTAT 
CATCGTATGG ATCAAGCCAT TAACGATAAT AACGTCCACG GCTTTTACTC GCTGGATAAA 
GAGTTTCACC TTGCGATCTC TGAGGCCAGC CGTAACCGGG TGTTGTTCGA TATGTCCCGT 
ATGTTATGGG AACAACGGAT TAATATCCCT TATGCCGGGC TTGATGAGCA GTCTGGAGAC 
AGAAATGTTT TACTTAATCT CAACAAACAA CATAAAGCGA TAGTGGATGC GATGCGCCAG 
TCTGATGCTG ACAGCGCCTA TGAGGGATCT CTGGAACATT TACGCTATGT GAGAAAGATT 
GTCGGCGGCT AA
 
Protein sequence
MEATGGCFSL SCTVINYHDH QRQDGMLNPF KIPWIWIGGR MVIPEVRQER LYQKIANLII 
KLINDNIFPP GTFLPPEREL AKQLGVSRAS LREALIVLEI SGWIVIQSGN GVIVSDKKHL 
ASDYTIEEIL STRELVDSHC ARLAAQNDNV DVINQIEAIY HRMDQAINDN NVHGFYSLDK 
EFHLAISEAS RNRVLFDMSR MLWEQRINIP YAGLDEQSGD RNVLLNLNKQ HKAIVDAMRQ 
SDADSAYEGS LEHLRYVRKI VGG