Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1597 |
Symbol | |
ID | 6484062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1562163 |
End bp | 1563416 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642736983 |
Product | inner membrane transport protein YnfM |
Protein accession | YP_002040735 |
Protein GI | 194443859 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 72 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTCGTA CAACTATTCT CGATGACGCC ACGGCGAGCG ATATCGATGA ACAACGCCAT TCTCAGCCGG TTCAATTTAT TAAACGCGGT ACAGCGCCTT TCATGCGCGT CACGCTGGCT CTTTTTTCCG CGGGCCTGGC GACTTTCGCG CTCCTTTATT GCGTTCAGCC TATACTACCG GTACTTTCCC AGGAGTTTGG CGTCTCCCCC GCCAGCAGCA GCGTTTCACT TTCTATTTCT ACCGCCATGC TGGCTATCGG CTTACTTTTT ACCGGCCCGC TTTCTGATGC GATAGGCCGT AAACCGGTGA TGGTCACCGC CTTGTTATTA GCCTCCTGCT GCACATTGTT ATCAACCATG ATGACCAGCT GGCATGGTAT TCTGATTATG CGCGCGCTGA TCGGTCTGTC GTTAAGCGGC GTCGCCGCGG TGGGAATGAC CTACCTGAGC GAAGAAATCC ATCCCAGCTT TGTCGCTTTC TCTATGGGAC TCTATATTAG CGGTAATTCC ATCGGCGGGA TGAGCGGGCG TTTATTAAGC GGCGTCATGA CCGACTTTTT TAACTGGCGC ATCGCGCTGG CGGCCATCGG ATGCTTTGCG CTGGCGTCCG CGCTGATGTT CTGGAAGATT TTACCCGCCT CGCAACATTT CCGTCCCACG TCGCTACGGC CTAAAACGCT ATTTATTAAT TTCCGTCTCC ACTGGCGCGA TCGAGGGTTA CCTCTGCTGT TTGCGGAAGG CTTTTTACTG ATGGGCGCGT TCGTCACCCT GTTTAACTAC ATTGGCTATC GCCTGATGCT CTCCCCCTGG GAATTAAGCC AGGCCGTGGT CGGACTGTTA TCCGTAGCCT ATCTCACCGG CACATGGAGC TCGCCGAAAG CTGGCGCAAT GACCTCACGC TATGGCCGGG GGCCGGTGAT GCTGTTCTCT ACCGCAGTAA TGCTGGGTGG GCTTTTACTG ACGCTTTTTA CCTCGCTTTG GCTGATTTTT GCCGGGATGC TGCTTTTTTC CGCCGGCTTT TTCGCCGCGC ACTCCGTGGC CAGTAGTTGG ATTGGCCCGC GTGCGCGCCG GGCGAAGGGA CAGGCCTCGT CACTTTATCT TTTCAGCTAT TATCTGGGGT CCAGTATTGC CGGGACGCTA GGCGGCGTAT TCTGGCATAG TTACGGCTGG AACGGCGTAG GTGGTTTTAT CGCGCTAATG CTGGTGCTGG CCATCCTGGT CGGGACGCGG TTACATCACC GTCTTCATGC CTGA
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Protein sequence | MSRTTILDDA TASDIDEQRH SQPVQFIKRG TAPFMRVTLA LFSAGLATFA LLYCVQPILP VLSQEFGVSP ASSSVSLSIS TAMLAIGLLF TGPLSDAIGR KPVMVTALLL ASCCTLLSTM MTSWHGILIM RALIGLSLSG VAAVGMTYLS EEIHPSFVAF SMGLYISGNS IGGMSGRLLS GVMTDFFNWR IALAAIGCFA LASALMFWKI LPASQHFRPT SLRPKTLFIN FRLHWRDRGL PLLFAEGFLL MGAFVTLFNY IGYRLMLSPW ELSQAVVGLL SVAYLTGTWS SPKAGAMTSR YGRGPVMLFS TAVMLGGLLL TLFTSLWLIF AGMLLFSAGF FAAHSVASSW IGPRARRAKG QASSLYLFSY YLGSSIAGTL GGVFWHSYGW NGVGGFIALM LVLAILVGTR LHHRLHA
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