Gene SNSL254_A1577 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1577 
Symbol 
ID6484400 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp1541629 
End bp1543275 
Gene Length1647 bp 
Protein Length548 aa 
Translation table11 
GC content55% 
IMG OID642736963 
Productfumarate hydratase class I, anaerobic 
Protein accessionYP_002040715 
Protein GI194443891 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones62 
Fosmid unclonability p-value0.551964 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAACA AACCCTTCTT TTATCAAGAC CCTTTTCCCC TCAAAAAGGA CGATACCGAG 
TACTACTTGT TGACCAGCGA ACATGTTTCC GTCGCCGAAT TCGAAGGACA AGAGATCCTG 
AAAGTCGCGC CGGAAGCGCT AACGCTGTTG GCGCGTCAGG CCTTCCACGA TGCGTCTTTT 
ATGCTACGTC CCGCGCATCA GCAGCAGGTG GCGGATATTC TGCGCGATCC GCAGGCCAGT 
GAAAACGACA AATATGTCGC GCTGCAATTC CTGCGAAACT CCGATATCGC GGCCAAGGGC 
GTGTTGCCCA CCTGCCAGGA TACCGGTACG GCCATTATTG TCGGCAAAAA AGGTCAACGC 
GTCTGGACTG GTGGAGGTGA TGAAGCGGCG CTGGCTCGCG GCGTATATAA CACCTATATC 
GAAGATAACC TGCGCTATTC ACAGAACGCG GCGCTGGATA TGTACAAAGA GGTCAATACC 
GGTACTAACC TGCCGGCGCA GATCGATCTC TACAGCGTCG ATGGCGATGA ATATAAATTC 
CTCTGTATCG CTAAAGGCGG CGGATCGGCG AATAAAACCT ACCTCTATCA GGAGACAAAA 
GCGCTTCTGA CGCCGGGTAA GCTTAAAAAT TATCTCGTCG ATAAGATGCG TACGCTGGGC 
ACCGCCGCTT GTCCGCCGTA TCACATCGCG TTTGTCATTG GCGGCACCTC GGCGGAAGCG 
AACCTGAAGA CCGTTAAGCT GGCCTCGGCA AAATACTATG ATGCGCTACC AACCGAAGGC 
AATGAACACG GGCAGGCCTT CCGCGATATT GAGCTGGAAA AAGAATTGTT GCTTGAGGCG 
CAAAATCTTG GCTTAGGCGC GCAGTTCGGC GGCAAGTATT TCGCTCACGA TATTCGTGTC 
ATCCGATTGC CGCGCCATGG GGCATCGTGT CCGGTAGGTA TGGGCGTGTC CTGCTCCGCG 
GATCGAAACA TTAAAGCGAA GATCAACCGG GAAGGGATCT GGATCGAGAA GCTGGAGCGC 
AATCCCGGTA AATATATTCC AGAGGCGCTG CGCCAGGCGG GAGAGGGCGA GGCGGTGCGC 
GTTGATCTTA ACCGTCCCAT GAGCGAGATA CTGCAACAAC TGTCGCAGTA TCCGGTATCA 
ACGCGCCTGT CGCTGAACGG CACGATTATT GTGGGCCGCG ACATCGCGCA CGCTAAACTG 
AAAGAACGGA TGGACAGAGG CGAAGGTTTG CCGCAGTACA TCAAAAATCA TCCTATCTAT 
TATGCGGGGC CGGCAAAAAC GCCGGAAGGG TATGCCTCCG GGTCGCTTGG GCCGACTACC 
GCAGGACGAA TGGACTCTTA TGTTGATCAG CTCCAGTCGC AGGGCGGCAG TATGATCATG 
CTGGCGAAAG GCAACCGCAG CCAGCAGGTG ACCGATGCCT GTAAGAAACA TGGCGGCTTC 
TACCTGGGCA GTATCGGCGG CCCGGCAGCC GTTCTGGCGC AGGGTAGTAT CAAGCGCCTG 
GAGTGCGTGG AATATCCTGA ACTGGGTATG GAGGCTATCT GGAAAATTGA AGTGGAGGAT 
TTTCCGGCCT TCATTCTGGT GGATGATAAA GGCAACGATT TCTTCCAGCA GATTCAGTCA 
TCGCAGTGCG CGCGCTGCGT TAAGTAA
 
Protein sequence
MSNKPFFYQD PFPLKKDDTE YYLLTSEHVS VAEFEGQEIL KVAPEALTLL ARQAFHDASF 
MLRPAHQQQV ADILRDPQAS ENDKYVALQF LRNSDIAAKG VLPTCQDTGT AIIVGKKGQR 
VWTGGGDEAA LARGVYNTYI EDNLRYSQNA ALDMYKEVNT GTNLPAQIDL YSVDGDEYKF 
LCIAKGGGSA NKTYLYQETK ALLTPGKLKN YLVDKMRTLG TAACPPYHIA FVIGGTSAEA 
NLKTVKLASA KYYDALPTEG NEHGQAFRDI ELEKELLLEA QNLGLGAQFG GKYFAHDIRV 
IRLPRHGASC PVGMGVSCSA DRNIKAKINR EGIWIEKLER NPGKYIPEAL RQAGEGEAVR 
VDLNRPMSEI LQQLSQYPVS TRLSLNGTII VGRDIAHAKL KERMDRGEGL PQYIKNHPIY 
YAGPAKTPEG YASGSLGPTT AGRMDSYVDQ LQSQGGSMIM LAKGNRSQQV TDACKKHGGF 
YLGSIGGPAA VLAQGSIKRL ECVEYPELGM EAIWKIEVED FPAFILVDDK GNDFFQQIQS 
SQCARCVK