Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1506 |
Symbol | |
ID | 6483920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 1479843 |
End bp | 1481336 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 642736893 |
Product | type III secretion outer membrane pore, YscC/HrcC family |
Protein accession | YP_002040647 |
Protein GI | 194442462 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.000419155 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTAGTAA ATAAACGTTT AATCTTAATT TTACTATTTA TACTCAATAC AGCAAAGAGT GATGAGTTAT CATGGAAAGG TAATGACTTC ACCCTTTATG CCAGACAAAT GCCATTAGCA GAGGTTTTAC ATCTGCTCTC AGAGAACTAT GATACGGCTA TTACTATTAG CCCATTGATA ACAGCTACAT TTAGTGGAAA AATTCCGCCT GGACCACCGG TCGATATTTT GAATAACCTG GCAGCACAAT ATGATTTGCT TACCTGGTTT GATGGCAGCA TGTTATATGT ATATCCTGCA TCGTTATTAA AACATCAGGT TATCACTTTC AATATTTTAT CTACTGGACG GTTCATTCAT TACTTACGCA GCCAGAATAT CCTTTCATCA CCGGGATGCG AGGTTAAAGA AATTACCGGT ACCAAAGCTG TGGAGGTGAG CGGTGTTCCC AGCTGCCTGA CTCGTATTAG TCAATTAGCT TCAGTGCTGG ATAATGCGTT AATCAAACGA AAAGACAGTG CGGTGAGTGT AAGTATATAC ACGCTTAAGT ATGCCACTGC GATGGATACC CAATACCAAT ATCGCGATCA GTCCGTCGTG GTTCCAGGGG TCGTGAGTGT ATTGCGTGAG ATGAGTAAAA CCAGCGTACC GGCGTCATCG ACGAACAATG GTTCACCCGC TACACAGGCA TTGCCCATGT TTGCTGCCGA CCCACGTCAG AATGCAGTGA TCGTTCGTGA TTATGCGGCC AATATGGCCG GGTATCGGAA ACTTATCACA GAATTAGATC AACGCCAGCA GATGATAGAG ATTTCGGTGA AAATTATCGA TGTTAATGCT GGAGATATTA ACCAGTTAGG CATCGACTGG GGAACGGCAG TGTCGCTGGG TGGCAAGAAA ATTGCGTTCA ATACAGGTTT GAATGACGGT GGTGCTAGCG GTTTTTCAAC GGTAATCAGC GATACCTCAA ACTTTATGGT GCGTTTGAAT GCCCTGGAAA AAAGCTCTCA GGCTTATGTA CTTTCCCAGC CATCTGTGGT GACTTTAAAT AATATCCAGG CTGTGCTGGA TAAAAATATT ACTTTCTATA CCAAACTGCA GGGAGAAAAA GTGGCTAAAC TTGAATCCAT CACTACGGGT TCTTTGTTGC GCGTTACACC TCGCTTGTTA AATGATAATG GCACGCAAAA AATAATGCTT AATCTTAATA TTCAGGATGG ACAACAAAGT GATACGCAAA GCGAAACAGA CCCGCTGCCC GAAGTGCAAA ATTCTGAAAT TGCTTCGCAG GCCACATTAT TGGCCGGGCA AAGTCTATTG CTGGGAGGAT TTAAACAAGG TAAACAAATC CACTCGCAAA ATAAAATTCC TTTATTGGGC GATATTCCTG TCGTAGGTCA TTTGTTTCGC AATGATACGA CTCAAGTACA TAGTGTAATC AGGCTTTTTT TGATTAAAGC CTCAGTAGTA AATAATGGCA TATCTCATGG TTAA
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Protein sequence | MVVNKRLILI LLFILNTAKS DELSWKGNDF TLYARQMPLA EVLHLLSENY DTAITISPLI TATFSGKIPP GPPVDILNNL AAQYDLLTWF DGSMLYVYPA SLLKHQVITF NILSTGRFIH YLRSQNILSS PGCEVKEITG TKAVEVSGVP SCLTRISQLA SVLDNALIKR KDSAVSVSIY TLKYATAMDT QYQYRDQSVV VPGVVSVLRE MSKTSVPASS TNNGSPATQA LPMFAADPRQ NAVIVRDYAA NMAGYRKLIT ELDQRQQMIE ISVKIIDVNA GDINQLGIDW GTAVSLGGKK IAFNTGLNDG GASGFSTVIS DTSNFMVRLN ALEKSSQAYV LSQPSVVTLN NIQAVLDKNI TFYTKLQGEK VAKLESITTG SLLRVTPRLL NDNGTQKIML NLNIQDGQQS DTQSETDPLP EVQNSEIASQ ATLLAGQSLL LGGFKQGKQI HSQNKIPLLG DIPVVGHLFR NDTTQVHSVI RLFLIKASVV NNGISHG
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