| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1505 |
|---|
| Symbol | |
|---|
| ID | 6485602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 1476277 |
|---|
| End bp | 1479039 |
|---|
| Gene Length | 2763 bp |
|---|
| Protein Length | 920 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642736892 |
|---|
| Product | secretion system regulator:Sensor component |
|---|
| Protein accession | YP_002040646 |
|---|
| Protein GI | 194443927 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.0000630125 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTGC TCAATCTCAA GAATACGCTG CAAACATCTT TAGTAATCAG GCTAACTTTT
TTATTTTTAT TAACAACAAT AATTATTTGG CTGCTATCTG TGCTTACCGC AGCTTATATA
TCAATGGTTC AGAAACGGCA GCATATAATA GAGGATTTAT CCGTTCTATC CGAGATGAAT
ATTGTACTAA GCAATCAACG GTTTGAAGAG GCTGAACGTG ACGCTAAAAA TTTAATGTAT
CAATGCTCAT TAGCGACTGA GATTCATCAT AACGATATTT TCCCTGAGGT GAGCCGGCAT
CTATCTGTCG GTCCTTCAAA TTGCACGCCG ACGCTAAACG GAGAGAAGCA CCGTCTCTTT
CTGCAGTCCT CTGATATCGA TGAAAAAAGC TTTCGTCGCG ATAGTTTTAT TCTTAATCAT
AAAAATGAGA TTTCGTTATT ATCTACTGAT AACCCTTCAG ATTATTCAAC TCTACAGCCT
TTAACGCGAA AAAGCTTTCC TTTATACCCA ACCCATGCCG GGTTTTACTG GAGTGAACCA
GAATACATAA ACGGCAAAGG ATGGCACGCT TCCGTTGCGG TTGCCGATCA GCAAGGCGTA
TTTTTTGGGG TGACGGTTAA ACTTCCCGAT CTCATTACTA AGAGCCACCT GCCATTAGAT
GATAGTATTC GAGTATGGCT GGATCAAAAC AACCACTTAT TGCCGTTTTC ATACATCCCG
CAAAAAATAC GTACACAGTT AGAAAATGTA ACGCTGCATG ATGGATGGCA GCAAATTCCC
GGATTTCTGA TATTACGCAC AACCTTGCAT GGCCCCGGAT GGAGTCTGGT TACGCTGTAC
CCATACGGTA ATCTACATAA TCGCATCTTA AAAATTATCC TTCAACAAAT CCCCTTTACA
TTAACAGCAT TGGTGTTGAT GACGTCGGCT TTTTGCTGGT TACTACATCG CTCACTGGCC
AAACCGTTAT GGCGTTTTGT CGATGTCATT AATAAAACCG CAACTGCACC GCTGAGCACA
CGTTTACCAG CACAACGACT GGATGAATTA GATAGTATTG CCGGTGCTTT TAACCAACTG
CTTGATACTC TACAAGTCCA ATACGACAAT CTGGAAAACA AAGTCGCAGA GCGCACCCAG
GCGCTAAATG AAGCAAAAAA ACGCGCTGAG CGAGCTAACA AACGTAAAAG CATTCATCTT
ACGGTAATAA GTCATGAGTT ACGTACTCCG ATGAATGGCG TACTCGGTGC GATTGAATTA
TTACAAACCA CCCCTTTAAA CATAGAGCAG CAAGGACTAG CTGATACCGC CAGAAATTGT
ACACTGTCTT TGTTAGCTAT TATTAATAAT CTGCTGGATT TTTCACGCAT CGAGTCTGGT
CATTTCACAT TACATATGGA AGAAACAGCG TTACTGCCGT TACTGGACCA GGCAATGCAA
ACCATCCAGG GGCCGGCGCA AAGCAAAAAA CTGTCATTAC GTACTTTTGT CGGTCAACAT
GTCCCTCTCT ATTTTCATAC CGACAGTATC CGTTTACGGC AAATTTTGGT TAATTTACTC
GGGAACGCGG TAAAATTTAC CGAAACCGGA GGGATACGTC TGACGGTCAA GCGTCATGAG
GAACAATTAA TATTTCTGGT TAGCGATAGC GGTAAAGGGA TTGAAATACA GCAGCAGTCT
CAAATCTTTA CTGCTTTTTA TCAAGCAGAC ACAAATTCGC AAGGTACAGG AATTGGACTG
ACTATTGCGT CAAGCCTGGC TAAAATGATG GGCGGTAATC TGACACTAAA AAGTGTCCCC
GGGGTTGGAA CCTGTGTCTC GCTAGTATTA CCCTTACAAG AATACCAGCC GCCTCAACCA
ATTAAAGGGA CACTGTCAGC GCCGTTCTGC CTGCATCGCC AACTGGCTTG CTGGGGAATA
CGCGGCGAGC CACCCCACCA GCAAAATGCG CTTCTCAACG CAGAGCTTTT GTATTTCCCC
GGAAAACTCT ACGACCTGGC GCAACAGTTA ATATTGTGTA CACCAAATAT GCCAGTAATA
AATAATTTGT TACCACCCTG GCAGTTGCAG ATTCTTTTGG TTGATGATGC CGATATTAAT
CGGGATATCA TCGGCAAAAT GCTTGTCAGC CTGGGCCAAC ACGTCACTAT TGCCGCCAGT
AGTAACGAGG CTCTGACTTT ATCACAACAG CAGCGATTCG ATTTAGTACT GATTGACATT
AGAATGCCAG AAATAGATGG TATTGAATGT GTACAATTAT GGCACGATGA GCCGAATAAT
TTAGATCCTG ACTGCATGTT TGTGGCGCTA TCCGCTAGCG TAGCGGCAGA AGATATTCAT
CGTTGTAAAA AAAATGGGAT TCATCATTAC ATTACCAAAC CAGTGACATT GGCTACCTTA
GCTCGCTATA TCAGTATTGC CGCAGAATAC CAACTTTTAC GAAATATAGA GCTACAGGAG
CAGGATCCGA GTCGCTGCTC AGCGCTACTG GCGACAGATG ATGTGGTCAT TAATAGCAAG
ATTTTCCAAT CACTGGACCT CTTGCTGGCT GATATTGAAA ATGCCGTATC GGCTGGAAAA
AAAATTGATC AGTTAATTCA CACATTAAAA GGCTGTTTAG GTCAAATAGG GCAGACTGAA
TTGGTATGCT ATGTCATAGA CATTGAGAAT CGCGTAAAAA TGGGGAAAAT CATCGCGCTG
GAGGAACTAA CCGACTTACG CCAGAAAATA CGTATGATCT TCAAAAACTA CACCATTACT
TAA
|
|---|
| Protein sequence | MNLLNLKNTL QTSLVIRLTF LFLLTTIIIW LLSVLTAAYI SMVQKRQHII EDLSVLSEMN
IVLSNQRFEE AERDAKNLMY QCSLATEIHH NDIFPEVSRH LSVGPSNCTP TLNGEKHRLF
LQSSDIDEKS FRRDSFILNH KNEISLLSTD NPSDYSTLQP LTRKSFPLYP THAGFYWSEP
EYINGKGWHA SVAVADQQGV FFGVTVKLPD LITKSHLPLD DSIRVWLDQN NHLLPFSYIP
QKIRTQLENV TLHDGWQQIP GFLILRTTLH GPGWSLVTLY PYGNLHNRIL KIILQQIPFT
LTALVLMTSA FCWLLHRSLA KPLWRFVDVI NKTATAPLST RLPAQRLDEL DSIAGAFNQL
LDTLQVQYDN LENKVAERTQ ALNEAKKRAE RANKRKSIHL TVISHELRTP MNGVLGAIEL
LQTTPLNIEQ QGLADTARNC TLSLLAIINN LLDFSRIESG HFTLHMEETA LLPLLDQAMQ
TIQGPAQSKK LSLRTFVGQH VPLYFHTDSI RLRQILVNLL GNAVKFTETG GIRLTVKRHE
EQLIFLVSDS GKGIEIQQQS QIFTAFYQAD TNSQGTGIGL TIASSLAKMM GGNLTLKSVP
GVGTCVSLVL PLQEYQPPQP IKGTLSAPFC LHRQLACWGI RGEPPHQQNA LLNAELLYFP
GKLYDLAQQL ILCTPNMPVI NNLLPPWQLQ ILLVDDADIN RDIIGKMLVS LGQHVTIAAS
SNEALTLSQQ QRFDLVLIDI RMPEIDGIEC VQLWHDEPNN LDPDCMFVAL SASVAAEDIH
RCKKNGIHHY ITKPVTLATL ARYISIAAEY QLLRNIELQE QDPSRCSALL ATDDVVINSK
IFQSLDLLLA DIENAVSAGK KIDQLIHTLK GCLGQIGQTE LVCYVIDIEN RVKMGKIIAL
EELTDLRQKI RMIFKNYTIT
|
|---|
| |