Gene SNSL254_A1500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1500 
Symbol 
ID6482663 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp1472499 
End bp1473137 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content55% 
IMG OID642736887 
Productresponse regulator 
Protein accessionYP_002040641 
Protein GI194446476 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0000000401264 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAATGG GGGCAGGGAT GGCGACAATT CATCTACTGG ATGATGATAC GGCGGTCACT 
AACGCGTGCG CGTTTTTACT GGAAAGTCTG GGATATGACG TAAAATGCTG GACGCAGGGG 
GCGGATTTTT TGGCGCAGGC CAGTCTGTAT CAGGCCGGGG TCGTATTACT GGATATGCGA 
ATGCCGGTAC TGGATGGGCA GGGCGTTCAT GATGCGTTGC GCCAGTGCGG AAGTACCCTG 
GCGGTTGTTT TTCTTACCGG GCATGGCGAT GTACCGATGG CCGTGGAGCA GATGAAACGC 
GGCGCCGTCG ATTTTCTGCA AAAACCGGTA TCGGTAAAAC CGCTACAGGC GGCGCTGGAG 
CGTGCGCTGA CGGTTTCATC GGCAGCGGTG GCGCGTCGTG AGATTATACT GTGTTACCAG 
CAGTTGACGC CGAAAGAGCG TGAGCTGGCC AGCCTGGTGG CAAAAGGATT TATGAACCGT 
GAAATTGCGG AAGCGATGAA TATCGCGGTG CGTACCGTAG AGGTGCACCG CGCCAGAGTC 
ATGGAAAAAA TGCAGGCCGG TAGCCTGGCG GAACTGATCA GGCGTTTCGA AAAAATGGCC 
TCGCCAGAGA CCAGAATACG AACAACGTAT GAGCCATGA
 
Protein sequence
MKMGAGMATI HLLDDDTAVT NACAFLLESL GYDVKCWTQG ADFLAQASLY QAGVVLLDMR 
MPVLDGQGVH DALRQCGSTL AVVFLTGHGD VPMAVEQMKR GAVDFLQKPV SVKPLQAALE 
RALTVSSAAV ARREIILCYQ QLTPKERELA SLVAKGFMNR EIAEAMNIAV RTVEVHRARV 
MEKMQAGSLA ELIRRFEKMA SPETRIRTTY EP