Gene SNSL254_A1458 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1458 
SymbolaroH 
ID6482189 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp1424813 
End bp1425859 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content53% 
IMG OID642736850 
Productphospho-2-dehydro-3-deoxyheptonate aldolase 
Protein accessionYP_002040604 
Protein GI194444464 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 
TIGRFAM ID[TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value0.958349 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAGAA CCGATGAACT CCGTACTGCG CGTATCGACA GCCTGGTAAC ACCGACCGAA 
CTCGCGCAGC GGTATCCTGT ATCGTCCTCC GTCGCCAGTC ACGTTACCGA CTCCCGACGC
CGGATAGAAA AGATTTTAAA TGGTGAAGAT CCACGGCTAC TGGTCGTCAT TGGCCCCTGT
TCGATTCACG ATCTGAATGC TGCCATGGAA TACGCGACGC AGCTCCAGGC ACAACGCCAA
AAGCATCAGG CGCGTCTGGA AATCGTCATG CGCACCTATT TTGAAAAACC GCGCACCGTC
GTGGGATGGA AAGGCCTGAT TTCCGATCCC GACTTGAATG GAAGTTACCG CGTCAATTAT
GGGCTTGAAC TGGCGCGTCG CTTGCTATTG CAGGTGAACG AACTGGGAGT ACCGACCGCC
ACAGAGTTTC TTGATATGGT CACTGGCCCG TTTATTGCCG ATCTGATCAG TTGGGGAGCG
ATTGGCGCGC GTACCACCGA AAGCCAAATC CATCGGGAAA TGGCTTCTGC GCTCTCTTGT
CCGGTCGGCT TTAAAAATGG TACAGATGGC AATACTCGCA TTGCCGTTGA CGCTATTCGC
GCTTCCCGCG CCAGCCATAT GTTTCTCTCG CCGGATAAAG ACGGACAGAT GACCATCTAC
CAGACGAGTG GCAACCCGTA TGGGCACATC ATCATGCGCG GCGGTAAAAA ACCGAACTAC
CACGCTGAAG ATATTGCCGC CGCCTGCGAT ACGTTGCATG AATTTGATCT GCCGGAACAT
CTGGTCGTCG ACTTCAGCCA CGGCAACTGT CAAAAACAGC ATCGCCGCCA GTTGGACGTA
TGTGATGATA TTTGCCAGCA GATTCGTAAT GGCTCCACGG CAATTGCCGG GATTATGGCA
GAGAGTTTTT TACGGGAAGG CACGCAAAAA ATTATCAGCG GTCAACCGTT AATCTATGGT
CAATCCATTA CCGATCCCTG CCTGAACTGG GAAGATACGG AAGTTCTGTT GGAAAAACTT
GCCGCGGCGG TAGACAGCCG CTTTTAA
 
Protein sequence
MNRTDELRTA RIDSLVTPTE LAQRYPVSSS VASHVTDSRR RIEKILNGED PRLLVVIGPC 
SIHDLNAAME YATQLQAQRQ KHQARLEIVM RTYFEKPRTV VGWKGLISDP DLNGSYRVNY
GLELARRLLL QVNELGVPTA TEFLDMVTGP FIADLISWGA IGARTTESQI HREMASALSC
PVGFKNGTDG NTRIAVDAIR ASRASHMFLS PDKDGQMTIY QTSGNPYGHI IMRGGKKPNY
HAEDIAAACD TLHEFDLPEH LVVDFSHGNC QKQHRRQLDV CDDICQQIRN GSTAIAGIMA
ESFLREGTQK IISGQPLIYG QSITDPCLNW EDTEVLLEKL AAAVDSRF