| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1406 |
|---|
| Symbol | sppA |
|---|
| ID | 6484024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 1374880 |
|---|
| End bp | 1376736 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642736798 |
|---|
| Product | protease 4 |
|---|
| Protein accession | YP_002040552 |
|---|
| Protein GI | 194443380 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.147485 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.119343 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACCC TGTGGCGATT TATTGCCGGA TTTTTTAAAT GGACGTGGCG AGTGTTGAAC
TTCGTCCGTG AAATGGTACT CAACCTGTTC TTTATTTTTC TGGTCCTGGT GGGCGTTGGG
ATCTGGATGC AGATCGGTAA CGGCAGCAAC AGTGAACAAA CGGCGCGCGG CGCTCTGCTG
CTGGATATTT CCGGCGTCAT TGTGGATAAA CCCTCCACCA ATCATCGTCT GGGCGCGCTG
GGTCGCCAGT TATTTGGCGC CAGCTCCGAC CGTCTGCAGG AAAACTCCCT GTTTGACATC
GTCAACGCTA TTCGTCAGGC GAAAGATGAC CGTAACATCA CGGGTATCGT TCTGGATCTG
AAAAACTTCA CCGGTGCCGA TCAGCCGTCA ATGCGCTATA TCGGTAAAGC GCTGCGCGAA
TTCCGCGATA GCGGCAAACC GGTTTTCGCC GTGGGTGAAA ACTACAGCCA GGGTCAGTAT
TACCTCGCCA GTTTCGCCAA TAAAATTTGG CTTTCCCCAC AGGGTCAGGT AGATCTTCAC
GGCTTCGCTA CGAATGGCCT GTACTACAAA ACGCTGCTGG ATAAACTGAA AGTCTCTACC
CACGTTTTCC GGGTCGGCAC CTATAAATCC GCCGTCGAGC CGTTTATCCG CGACGATATG
TCGCCCGCCG CCCGCGAGGC CGACAGCCGC TGGATAGGCG AACTGTGGCA GAACTACCTG
CATACCGTTT CTGCCAATCG CCAGATTTCG CCGCAACAAC TGTTCCCCGG CGCGCAGGCT
ATTATCGACG GGTTAACCAG CGTGGGCGGC GACACCGCCA AATATGCGCT CGACCATAAA
CTGGTGGACG CCCTCGCCTC CAGCGCAGAT GTTGAAAAAG CGCTGACGAA GCAGTTTGGC
TGGAGCAAAA CCGAAAATAA CTATCGCGCG ATCAGCTATT ACGATTATTC GCTGAAAACG
CCTGCGGATA CCGGCGGTAC TATTGCGGTT ATTTTCGCCA ATGGCGCGAT TATGGATGGC
GAAGAAACGC CAGGGAATGT CGGCGGCGAC ACTACGGCAT CGCAGATCCG CGACGCACGC
CTTGATCCTA AAGTGAAAGC GATTGTGCTG CGCGTCAATA GCCCAGGCGG GAGCGTCAAC
GCCTCCGAAG TTATCCGCGC CGAACTGGCG GCAGCAAGAG CGGCTGGCAA ACCGGTGGTG
GTCTCAATGG GCGGCATGGC GGCCTCCGGC GGTTACTGGA TCTCTACGCC GGCAAACTAT
ATCGTGGCCA GCCCCAGCAC GCTGACGGGT TCAATTGGCA TCTTCGGCGT CATCAATACG
GTAGAAAACA GCCTGTCGTC GATTGGCGTA CACAGCGACG GCGTTTCCAC CTCGCCGCTG
GCGGATATTT CGATGACCAA AGCACTGTCA CCGGAAGTGC AGCAGATGAT GCAACTCAGT
ATTGAGTACG GCTACAAACG CTTTATCACG CTGGTGGCAG ACGCGCGTAA GCGTACGCCG
GAGCAAATTG ATAAAATCGC ACAAGGCCAT GTCTGGACCG GAGAAGACGC GAAAGCCAAT
GGTCTGGTGG ACAGTCTCGG CGACTTTGAC GACGCCGTCG CCAAAGCGGC GGAGCTGGCG
AAACTGAAAC AGTGGCATCT TGATTACTAT CAGGACGAAC CGACGGTCCT TGATATGGTC
ATGGACAGTA TGACCGGATC AGTACGCGCC ATGCTGCCGG AGGCCATTCA GGCTATGCTC
CCGGCGCCGC TCGTTTCCGC CGCCAACACG GTGAAGGCCG AGGGGGATAA ACTGGCGGCA
TTTAACGATC CCCAAAACCG TTATGCGTTC TGTTTGACTT GCGCGAACGT TCGCTAA
|
|---|
| Protein sequence | MRTLWRFIAG FFKWTWRVLN FVREMVLNLF FIFLVLVGVG IWMQIGNGSN SEQTARGALL
LDISGVIVDK PSTNHRLGAL GRQLFGASSD RLQENSLFDI VNAIRQAKDD RNITGIVLDL
KNFTGADQPS MRYIGKALRE FRDSGKPVFA VGENYSQGQY YLASFANKIW LSPQGQVDLH
GFATNGLYYK TLLDKLKVST HVFRVGTYKS AVEPFIRDDM SPAAREADSR WIGELWQNYL
HTVSANRQIS PQQLFPGAQA IIDGLTSVGG DTAKYALDHK LVDALASSAD VEKALTKQFG
WSKTENNYRA ISYYDYSLKT PADTGGTIAV IFANGAIMDG EETPGNVGGD TTASQIRDAR
LDPKVKAIVL RVNSPGGSVN ASEVIRAELA AARAAGKPVV VSMGGMAASG GYWISTPANY
IVASPSTLTG SIGIFGVINT VENSLSSIGV HSDGVSTSPL ADISMTKALS PEVQQMMQLS
IEYGYKRFIT LVADARKRTP EQIDKIAQGH VWTGEDAKAN GLVDSLGDFD DAVAKAAELA
KLKQWHLDYY QDEPTVLDMV MDSMTGSVRA MLPEAIQAML PAPLVSAANT VKAEGDKLAA
FNDPQNRYAF CLTCANVR
|
|---|
| |