| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1392 |
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| Symbol | |
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| ID | 6482186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 1360226 |
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| End bp | 1361719 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642736784 |
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| Product | ggdef domain protein |
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| Protein accession | YP_002040538 |
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| Protein GI | 194444042 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 0.0023922 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTTGC ATCATAAAGC GCTCAGGCAC TTTATCTCGG CAAGCGTCAT CGTTTTGACA
TCGTCCTTCC TGATTTACGA ACTTATTGCC AGCGACAGGG CAATGAATGC CTATATGCGT
TATATCATGG AGAGAGCCGA TTCGTCGTTT TTGTACGATA AGTACCAGAA TCAGAGCATC
GCCGCACATT TGATGCGAAC TTTTGAAGCG CCGGGAGCCC CCGTCACTGC AGAAAAACGC
CGCGCGTTTT GGGATGCCTT TGAGGCTATT AACGGTACGC ACGGTGTCAA CCTGACCCGG
CATAATTATC CGGCGCTACA TGGTACCCTG CAAACCGCCG CTACACAGTG TACCGATAAT
CTTGATGACG CCCTTTTACT GCCTGCGTTT GATCAGGCGG TAAGCATCAA CCGTTCGCAG
GACGACCACA GTCACGGGCT GGGCACACTG GAGCTTAAAT TCCGTTATTA CGTTGATTTA
AATAAACATT ATGTCTATTT CTATGATTTA ATCAACTCAC GGCGCTTCGC CATGCATCGT
TGGACTTTTT TACAAAAAGG CACAATGGGT ATTAACAGAA AAGATATAGA TAAACTTTTT
ACCGGCCGTA CGGTTATTTC AAGTATTTAC ATGGATGATA TTATCCAGGA AAACGTCATG
AGCTTTTTAA CGCCAGTCTA TCTGGCGGGA ACGTTAAAAG GTATCGTGAT GGTGGATGTT
AACCAGGATA ATTTAAAAAA TATTTTTTAT ACCCAGGACC GTCCGCTGGT TTGGCGTTAT
CTTAACGTAA CACTAAAGGA TATGGACTCC GGAAAAGAAA TTATTATTAA TCAAAGCAAA
AATAATCTGT TTCAATATGT GAATTATAGC CATGATATCC CGGGTGGACT GCGCGTTTCG
TTGTCCCTTG ATTTAACCTA TTTCCTTGTC TCGTCCTGGA AAGCGCTGGC CTTTTACTTA
CTGGCAACGG CGCTCCTGCT TAATATGGTA CGGATGCACT TTCGGCTTTA TCGCAACGTC
ACACGCGAAA ATATTAGCGA TGCCATGACC GGGCTTTACA ACCGTAAAAT ATTAACACCG
GTGCTGGAAC AGCGACTGCA ACGCCTGGTC AATACCGGGA CGCCGGTGAC ATTTGTCGCT
ATTGATTGCG ATAGGTTAAA ACTGATCAAC GATACCCAGG GGCACCAGGA AGGCGACCGA
ATTATAACCC TGTTGGCGAA AGCGATTAAA ACATCGATTC GTAAAAGCGA TTACGCCATT
CGCCTCGGCG GCGATGAGTT CTGTATTATT CTTGTTGATT ACGCGGCGGA TTTGGCTATC
CATCTGCCGG AGCGTATTAT TCGTAACCTG CAAATTATCG CACCGGATAA GACAGTCCAT
TTTTCTGCCG GGATTTATAA TATGCAGCCC AATGATACGA TTAATGATGC CTACCAGGCT
TCCGATGCGC AGCTCTATCT GAACAAACAA CAAAAACAAC ATCGTTCATC ATAG
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| Protein sequence | MNLHHKALRH FISASVIVLT SSFLIYELIA SDRAMNAYMR YIMERADSSF LYDKYQNQSI
AAHLMRTFEA PGAPVTAEKR RAFWDAFEAI NGTHGVNLTR HNYPALHGTL QTAATQCTDN
LDDALLLPAF DQAVSINRSQ DDHSHGLGTL ELKFRYYVDL NKHYVYFYDL INSRRFAMHR
WTFLQKGTMG INRKDIDKLF TGRTVISSIY MDDIIQENVM SFLTPVYLAG TLKGIVMVDV
NQDNLKNIFY TQDRPLVWRY LNVTLKDMDS GKEIIINQSK NNLFQYVNYS HDIPGGLRVS
LSLDLTYFLV SSWKALAFYL LATALLLNMV RMHFRLYRNV TRENISDAMT GLYNRKILTP
VLEQRLQRLV NTGTPVTFVA IDCDRLKLIN DTQGHQEGDR IITLLAKAIK TSIRKSDYAI
RLGGDEFCII LVDYAADLAI HLPERIIRNL QIIAPDKTVH FSAGIYNMQP NDTINDAYQA
SDAQLYLNKQ QKQHRSS
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