| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1349 |
|---|
| Symbol | |
|---|
| ID | 6486887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 1334042 |
|---|
| End bp | 1334599 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642736744 |
|---|
| Product | virulence membrane protein PagC |
|---|
| Protein accession | YP_002040501 |
|---|
| Protein GI | 194444089 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 0.0661499 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA TTATTTTATC CACTTTAGTT ATTACTACAA GCGTTTTGGT TGTAAATATT
GCACAGGCCG ATACTAACGC CTTTTCCGTG GGGTATGCAC AAAGTAAAGT TCAGGATTTC
AAAAATATCC GAGGGGTAAA TGTGAAATAC CGTTATGAGG ATGACTCTCC GGTAAGTTTT
ATTTCCTCGC TAAGTTACTT ATATGGAGAC AGACAGGCTT CCGGGTCTGT TGAGCCTGAA
GGTATTCATT ACCATGACAA GTTTGAGGTG AAGTACGGTT CTTTAATGGT TGGGCCAGCC
TATCGATTGT CTGACAATTT TTCGTTATAC GCGCTGGCGG GTGTCGGCAC GGTAAAGGCG
ACATTTAAAG AACATTCCAC TCAGGATGGC GATTCTTTTT CTAACAAAAT TTCCTCAAGG
AAAACGGGAT TTGCCTGGGG CGCGGGTGTA CAGATGAATC CGCTGGAGAA TATCGTCGTC
GATGTTGGGT ATGAAGGAAG CAACATCTCC TCTACAAAAA TAAACGGCTT CAACGTCGGG
GTTGGATACC GTTTCTGA
|
|---|
| Protein sequence | MKNIILSTLV ITTSVLVVNI AQADTNAFSV GYAQSKVQDF KNIRGVNVKY RYEDDSPVSF
ISSLSYLYGD RQASGSVEPE GIHYHDKFEV KYGSLMVGPA YRLSDNFSLY ALAGVGTVKA
TFKEHSTQDG DSFSNKISSR KTGFAWGAGV QMNPLENIVV DVGYEGSNIS STKINGFNVG
VGYRF
|
|---|
| |