| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1331 |
|---|
| Symbol | |
|---|
| ID | 6484777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 1319007 |
|---|
| End bp | 1320470 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642736729 |
|---|
| Product | sensor protein PhoQ |
|---|
| Protein accession | YP_002040486 |
|---|
| Protein GI | 194444857 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0246748 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 0.298422 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAT TTGCTCGCCA TTTTCTGCCG CTGTCGCTGC GGGTTCGTTT TTTGCTGGCG
ACAGCCGGCG TCGTGCTGGT GCTTTCTTTG GCATATGGCA TAGTGGCGCT GGTCGGCTAT
AGCGTAAGTT TTGATAAAAC CACCTTTCGT CTGCTGCGCG GCGAAAGCAA CCTGTTTTAC
ACCCTCGCCA AATGGGAAAA TAATAAAATC AGCGTTGAGC TGCCTGAAAA TCTGGACATG
CAAAGCCCGA CCATGACGCT GATTTACGAT GAAACGGGCA AATTATTATG GACGCAGCGC
AACATCCCCT GGCTGATTAA AAGCATTCAA CCGGAATGGT TAAAAACGAA CGGCTTCCAT
GAAATTGAAA CCAACGTAGA CGCTACCAGC ACGCTGTTGA GCGAGGACCA TTCCGCGCAG
GAAAAACTCA AAGAAGTACG TGAAGATGAC GATGATGCCG AGATGACCCA CTCGGTAGCG
GTAAATATTT ATCCTGCCAC GGCGCGGATG CCGCAGTTAA CCATCGTGGT GGTCGATACC
ATTCCGATAG AACTAAAACG CTCATATATG GTGTGGAGCT GGTTCGTATA CGTGCTGGCC
GCCAATTTAC TGTTAGTCAT TCCTTTACTG TGGATCGCCG CCTGGTGGAG CTTACGCCCT
ATCGAGGCGC TGGCGCGGGA AGTCCGCGAG CTTGAAGATC ATCACCGCGA AATGCTCAAT
CCGGAGACGA CGCGTGAGCT GACCAGCCTT GTGCGCAACC TTAATCAACT CCTCAAAAGC
GAGCGTGAAC GTTATAACAA ATACCGCACG ACCCTGACCG ACCTGACGCA CAGTTTAAAA
ACGCCGCTCG CGGTTTTGCA GAGTACGTTA CGCTCTTTAC GCAACGAAAA GATGAGCGTC
AGCAAAGCTG AACCGGTGAT GCTGGAACAG ATCAGCCGGA TTTCCCAGCA GATCGGCTAT
TATCTGCATC GCGCCAGTAT GCGCGGTAGC GGCGTATTGT TAAGCCGCGA ACTGCATCCC
GTCGCGCCGT TGTTAGATAA CCTGATCTCC GCGCTCAATA AAGTTTATCA GCGTAAAGGG
GTGAATATCA GTATGGATAT TTCACCAGAG ATCAGTTTTG TCGGCGAGCA AAACGACTTT
GTCGAAGTAA TGGGCAACGT ACTGGACAAC GCTTGTAAAT ATTGTCTGGA GTTTGTCGAG
ATTTCGGCTC GCCAGACCGA CGATCATTTG CATATTTTCG TCGAAGATGA TGGCCCAGGC
ATTCCCCACA GTAAACGATC CCTGGTGTTT GATCGCGGTC AGCGCGCCGA TACCCTACGA
CCAGGACAAG GCGTGGGGCT GGCTGTCGCG CGCGAGATTA CGGAACAATA CGCCGGGCAG
ATCATTGCCA GCGACAGCCT GCTCGGCGGT GCCCGTATGG AGGTCGTTTT TGGCCGACAG
CACCCCACAC AGAAAGAGGA ATAA
|
|---|
| Protein sequence | MNKFARHFLP LSLRVRFLLA TAGVVLVLSL AYGIVALVGY SVSFDKTTFR LLRGESNLFY
TLAKWENNKI SVELPENLDM QSPTMTLIYD ETGKLLWTQR NIPWLIKSIQ PEWLKTNGFH
EIETNVDATS TLLSEDHSAQ EKLKEVREDD DDAEMTHSVA VNIYPATARM PQLTIVVVDT
IPIELKRSYM VWSWFVYVLA ANLLLVIPLL WIAAWWSLRP IEALAREVRE LEDHHREMLN
PETTRELTSL VRNLNQLLKS ERERYNKYRT TLTDLTHSLK TPLAVLQSTL RSLRNEKMSV
SKAEPVMLEQ ISRISQQIGY YLHRASMRGS GVLLSRELHP VAPLLDNLIS ALNKVYQRKG
VNISMDISPE ISFVGEQNDF VEVMGNVLDN ACKYCLEFVE ISARQTDDHL HIFVEDDGPG
IPHSKRSLVF DRGQRADTLR PGQGVGLAVA REITEQYAGQ IIASDSLLGG ARMEVVFGRQ
HPTQKEE
|
|---|
| |