Gene SNSL254_A1330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1330 
Symbol 
ID6485401 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp1317805 
End bp1318926 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content56% 
IMG OID642736728 
Productcupin family protein 
Protein accessionYP_002040485 
Protein GI194444751 
COG category[S] Function unknown 
COG ID[COG2850] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.233449 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value0.341936 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATACC AATTAACTCT TAACTGGCCC GACTTTCTTG AACGCCACTG GCAAAAACGC 
CCGGTGGTCT TAAAACGTGG GTTTAGCAAC TTTATCGATC CGCTCTCGCC GGATGAGCTG 
GCGGGGCTGG CGATGGAAAG CGAAATCGAC AGCCGACTCG TTAGCCATCA GGATGGCAAA 
TGGCAGGTCA GCCATGGCCC TTTCGAAAGC TACGATCATC TGGGTGAGAG CAATTGGTCG 
CTGCTGGTAC AGGCGGTAAA CCACTGGCAC GAACCCACCG CCGCGCTGAT GCGCCCGTTC 
CGCGCTCTGC CGGACTGGCG TATCGACGAT CTGATGATCT CCTTTTCCGT CCCCGGCGGC 
GGCGTTGGCC CGCATCTGGA TCAGTATGAT GTGTTTATTA TCCAGGGAAC CGGTCGCCGT 
CGCTGGCGCG TGGGCGAAAA GCTGCAAATG CGTCAGCACT GCCCGCATCC CGACCTGTTA 
CAAGTCGATC CGTTCGAGGC CATTATTGAT GAAGAGCTGG AGCCGGGCGA CATTCTGTAT 
ATTCCGCCAG GATTCCCGCA TGAAGGCTAT GCGCTGGAAA ACGCCATGAA CTATTCGGTC 
GGTTTTCGCG CGCCCAATAG CCGTGAGCTG ATCAGCGGTT TTGCCGATTA CGTCCTGCAA 
CGGGAGTTGG GCAATACATA CTACAGCGAT CCGGATATGC CGTCCCGCAA GCATCCGGCG 
GATATCCTGC CGCAGGAGAT GGATAAACTG CGTAATATGA TGCTCGATTT GATCAATCAA 
CCCGCGCATT TCCAACAGTG GCTTGGCGAG TTTCTCTCTC AGTCACGCCA CGAACTGGAT 
ATTGCGCCGC CGGAGCCGCC GTATCAGCCT GATGAAATTT ACGATGCCTT AAAGCAAGGC 
GAGGTATTAG TACGTCTCGG CGGGCTTCGC GTATTGCGTA TCGGCGATGA GGTCTATGCG 
AATGGCGAAA AAATAGACTC TCCGCATCGC CCCGCTCTGG AGGCGCTCGC CAGTCATATT 
GCACTGACCG CTGAAAACTT CGGCGATGCG CTGGAAGACC CGTCCTTCCT CGCGATGCTG 
GCGGCGCTGG TGAATAGCGG GTACTGGTTC TTCGAAGGAT AA
 
Protein sequence
MEYQLTLNWP DFLERHWQKR PVVLKRGFSN FIDPLSPDEL AGLAMESEID SRLVSHQDGK 
WQVSHGPFES YDHLGESNWS LLVQAVNHWH EPTAALMRPF RALPDWRIDD LMISFSVPGG 
GVGPHLDQYD VFIIQGTGRR RWRVGEKLQM RQHCPHPDLL QVDPFEAIID EELEPGDILY 
IPPGFPHEGY ALENAMNYSV GFRAPNSREL ISGFADYVLQ RELGNTYYSD PDMPSRKHPA 
DILPQEMDKL RNMMLDLINQ PAHFQQWLGE FLSQSRHELD IAPPEPPYQP DEIYDALKQG 
EVLVRLGGLR VLRIGDEVYA NGEKIDSPHR PALEALASHI ALTAENFGDA LEDPSFLAML 
AALVNSGYWF FEG