Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1322 |
Symbol | potD |
ID | 6484181 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1309459 |
End bp | 1310505 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642736720 |
Product | spermidine/putrescine ABC transporter periplasmic substrate-binding protein |
Protein accession | YP_002040477 |
Protein GI | 194444275 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.0110419 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT GGTCACGCCA CCTGCTCGCG GCGGGCGCCC TGGCGCTGGG TATGAGTGCC GCTCATGCCT CCGACAACGA CACGCTCTAT TTCTATAACT GGACTGAGTA TGTGCCGCCG GGCCTGCTGG AACAGTTCAC TAAAGAGACT GGCATTAAGG TGATTTATTC GACCTACGAG TCGAACGAAA CCATGTATGC CAAACTCAAA ACCTATAAAG ATGGCGCGTA TGACCTGGTT GTTCCTTCTA CATACTATGT CGACAAAATG CGCAAAGAAG GCATGATCCA GAAGATCGAT AAGTCGAAAT TAACCAATTT CCACAACCTC GATCCGGAAA TGCTCAACAA ACCGTTTGAC CCCAACAACG ATTATTCTGT TCCGTATATC TGGGGCGCAA CGGCGATTGG CGTGAACAGC GATGCTATCG ATCCAAAAAC CATTACCAGC TGGGCTGACT TGTGGAAACC GGAATATAAA AACAGCCTGC TTTTAACCGA CGATGCGCGA GAAGTCTTCC AGATGGCGCT GCGCAAGCTA GGTTATTCCG GTAACACTAC CGATCCGAAA GAGATCGAAG CGGCATATGA AGAGTTGAAA AAACTGATGC CGAACGTAGC GGCCTTCAAC TCCGATAATC CGGCGAATCC GTATATGGAA GGGGAAGTCA ATCTGGGGAT GGTGTGGAAC GGTTCGGCCT TCGTTGCTCG TCAGGCTGGC ACGCCGCTGG AGGTCGTCTG GCCGAAAGAA GGCGGTATTT TCTGGATGGA TAGCCTGGCT ATTCCGGCAA ACGCGAAAAA TAAAGAGGGC GCGCTGAAGC TAATCAACTT CCTGCTGCGT CCTGACGTCG CGAAAGAGGT GGCAGAAACC ATCGGCTACC CTACCCCCAA CCTGGCGGCG CGTAAGCTGT TAAGCCCGGA GGTCGCCAAT GATAAGTCGC TCTATCCGGA TGCGCAAACC ATCAGCAAAG GCGAGTGGCA AAACGATGTC GGCGACGCCA GCGCCATTTA TGAAGAGTAT TATCAGAAGC TAAAAGCAGG ACGCTAA
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Protein sequence | MKKWSRHLLA AGALALGMSA AHASDNDTLY FYNWTEYVPP GLLEQFTKET GIKVIYSTYE SNETMYAKLK TYKDGAYDLV VPSTYYVDKM RKEGMIQKID KSKLTNFHNL DPEMLNKPFD PNNDYSVPYI WGATAIGVNS DAIDPKTITS WADLWKPEYK NSLLLTDDAR EVFQMALRKL GYSGNTTDPK EIEAAYEELK KLMPNVAAFN SDNPANPYME GEVNLGMVWN GSAFVARQAG TPLEVVWPKE GGIFWMDSLA IPANAKNKEG ALKLINFLLR PDVAKEVAET IGYPTPNLAA RKLLSPEVAN DKSLYPDAQT ISKGEWQNDV GDASAIYEEY YQKLKAGR
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