Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1317 |
Symbol | lolC |
ID | 6483245 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 1304460 |
End bp | 1305659 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642736715 |
Product | outer membrane-specific lipoprotein transporter subunit LolC |
Protein accession | YP_002040472 |
Protein GI | 194445682 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.131027 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.00016263 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTATCAAC CTGTCGCTCT ATTCATTGGC CTGCGTTACA TGCGCGGGCG TGCAGCAGAT CGCTTCGGTC GCTTCGTTTC CTGGCTTTCC ACTATCGGCA TTACCCTGGG GGTGATGGCG CTGGTCACGG TATTGTCGGT GATGAACGGT TTTGAGCGCG AACTGCAAAA TAACATTCTT GGTTTGATGC CTCAGGCCAT CCTCTCTGCT GAACATGGTT CTCTTAACCC GAGTCAGATG CCGGAAAAAG CGGTGAATCT GCAAGGCGTT AACCGTATTG CGCCGCTGAC GACGGGCGAT GTCGTACTGC AAAGCGCGCG TAGCGTTGCA GTTGGCGTGA TGTTGGGTAT CGATCCGACG CAAAAAGATC CGTTAACGCC GTATCTGGTC AATGTGAAGC AAAGCGAATT ACAGCCGGGT AAGTATAATG TCATCCTCGG CGAGCAGCTC GCCGGACAGT TAGGGGTCAA CCGCGGCGAT CAGATTCGGC TAATGGTGCC ATCTGCCAGC CAGTTTACGC CAATGGGACG CCTGCCCAGC CAGCGTCTGT TTACGGTGAT TGGCACATTT GCCGCCAATA GCGAGGTCGA TGGCTATGAA ATGCTGGTCA ATATTCAGGA CGCGTCGCGT TTAATGCGCT ATCCGGCAGG CAATATTACC GGCTGGCGTC TGTGGCTGGA TGAACCGCTG CAAGTCGATA CCCTCAGCCA ACAGACGCTG CCGCAAGGCA CGAAGTGGCA GGACTGGCGC GAACGCAAAG GCGAGTTGTT CCAGGCTGTG CGCATGGAAA AGAACATGAT GGGATTGTTG CTGAGCCTCA TCGTGGCGGT CGCGGCTTTT AACATTATTA CTTCGTTGGG CCTGATGGTT ATGGAGAAGC AGGGTGAAGT GGCGATTTTA CAAACTCAAG GGCTGACGCC GCGACAAATT ATGATGGTCT TTATGGTGCA GGGCGCCAGC GCCGGGATTA TCGGCGCGCT GTTGGGCGCC GCGCTGGGCG CATTGCTTGC CAGCCAACTG AATAACCTGA TGCCGATCAT CGGCGCGTTT CTGGATGGCG CTGCGTTGCC CGTGGCGATA GAGCCGTTAC AGGTGATCGT TATCGCGCTG GTGGCAATGG CCATCGCGCT GCTTTCTACG CTTTATCCTT CCTGGCGCGC TGCCGCCACT CAACCCGCTG AGGCTTTACG TTATGAATAA
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Protein sequence | MYQPVALFIG LRYMRGRAAD RFGRFVSWLS TIGITLGVMA LVTVLSVMNG FERELQNNIL GLMPQAILSA EHGSLNPSQM PEKAVNLQGV NRIAPLTTGD VVLQSARSVA VGVMLGIDPT QKDPLTPYLV NVKQSELQPG KYNVILGEQL AGQLGVNRGD QIRLMVPSAS QFTPMGRLPS QRLFTVIGTF AANSEVDGYE MLVNIQDASR LMRYPAGNIT GWRLWLDEPL QVDTLSQQTL PQGTKWQDWR ERKGELFQAV RMEKNMMGLL LSLIVAVAAF NIITSLGLMV MEKQGEVAIL QTQGLTPRQI MMVFMVQGAS AGIIGALLGA ALGALLASQL NNLMPIIGAF LDGAALPVAI EPLQVIVIAL VAMAIALLST LYPSWRAAAT QPAEALRYE
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