Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1282 |
Symbol | rne |
ID | 6485605 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1270138 |
End bp | 1273344 |
Gene Length | 3207 bp |
Protein Length | 1068 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642736682 |
Product | ribonuclease E |
Protein accession | YP_002040439 |
Protein GI | 194445751 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.783205 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.0000048225 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAGAA TGTTAATCAA CGCGACTCAG CAGGAAGAGT TGCGCGTCGC CCTTGTAGAT GGGCAGCGTC TGTACGATCT GGATATAGAA AGCCCCGGAC ACGAGCAGAA AAAAGCGAAC ATCTATAAAG GCAAAATTAC CCGTATTGAA CCGAGCCTGG AAGCGGCTTT TGTTGATTAC GGCGCAGAAC GCCACGGTTT CCTCCCGTTA AAAGAAATTG CCCGCGAATA TTTCCCCGCT AACTACAGCG CTCATGGTCG CCCGAACATT AAAGACGTGT TACGCGAAGG CCAGGAAGTC ATTGTTCAAA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCGTTAAC CACCTTTATC AGTCTGGCGG GCAGCTACCT GGTACTGATG CCGAATAACC CGCGCGCGGG TGGTATTTCC CGTCGCATTG AAGGCGACGA TCGTACCGAG TTAAAAGAAG CGTTGGCCAG CCTGGAACTT CCTGAAGGGA TGGGGCTTAT CGTGCGTACC GCGGGCGTGG GTAAATCCGC CGAAGCGTTG CAGTGGGATT TAAGCTTCCG CCTGAAACAC TGGGAGGCCA TTCAGAAAGC CGCTGAAAGC CGTCCCGCGC CGTTCCTGAT CCATCAGGAA AGCAACGTCA TCGTACGCGC GTTTCGCGAC TATCTGCGTC AGGATATCGG TGAAATCCTG ATCGACAATC CAAAAGTGAT GGAAATGGCG CGTCAGCATA TCGCCGCGTT GGGCCGCCCG GATTTTAGCA GCAAAATTAA GCTGTACACC GGTGAAATCC CGTTGTTCAG CCATTACCAG ATCGAATCGC AGATCGAGTC AGCGTTCCAG CGTGAAGTGC GCCTGCCCTC CGGCGGCTCC ATCGTCATTG ACAGTACCGA AGCGTTAACC GCCATCGATA TCAACTCCGC CCGCGCGACT CGCGGCGGCG ATATCGAAGA AACCGCGTTC AACACCAATC TCGAAGCGGC CGACGAGATT GCCCGCCAGT TGCGTCTGCG CGACCTGGGC GGCCTGATCG TTATCGACTT TATCGATATG ACGCCGGTAC GTCACCAGCG CGCGGTAGAA AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGGGCGCGTA TTCAGATTAG CCATATTTCC CGCTTCGGCC TGCTCGAAAT GTCGCGTCAG CGCCTGAGCC CGTCTCTGGG CGAATCCAGC CATCACGTGT GTCCGCGCTG TAGCGGTACC GGCACCGTGC GCGATAACGA ATCTCTGTCG CTGTCCATTC TGCGCCTGAT TGAAGAAGAA GCGCTGAAAG AGAATACGCA GGAAGTCCAT GCCATTGTTC CGGTGCCGAT CGCCTCTTAT CTGCTTAACG AAAAACGGAC GGCAGTGAAC GCTATTGAGA CGCGTCAGGA TGGCGTCCGC TGTGTCATCG TCCCGAACGA TCAGATGGAA ACGCCGCACT ATTCCGTGCT GCGCGTACGC AAAGGGGAAG AAACGCCGAC CCTGAGCTAC ATGCTGCCGA AGCTGCACGA AGAAGCGATG GCGCTGCCTT CTGAAGAAGA GTACGCCGAG CGTAAACGCC CGGAACAGCC TGCGCTGGCG ACATTCGCTA TGCCAGATGT GCCTCCGGCG CCGACGCCTG TCGAACCGGC GGTTAGCGTC GCCACGGCGA AAAAGGATAA TGTTGCCGCC GCGCAGCCTG CCCAGCCGGG TCTGTTTAGC CGCTTCCTTA ACGCGCTGAA ACAACTGTTC AGCGGTGAAG AAACGAAAGC CGTCGAAACA GCCGCGCCGA AAGCGGAAGA AAAAGCGGAG CGTCAGCAGG ATCGTCGCAA GCCACGGCAG AACAACCGTC GCGATCGTAA CGAACGCCGC GACACCCGTG ATAACCGTGC CGGACGTGAC GGCGGCGAGA GCCGCGACGA TAATCGTCGT AACCGTCGCC AGACGCAGCA GCAAAATGCG GAAGCGCGCG ATACCCGCCA GCAGGAAACG GCGGAAAAAG TGAAAACCGG CGATGAACAG CAACAGACGC CGCGTCGCGA ACGCAGCCGC CGCCGCAATG ATGACAAGCG CCAGGCGCAG CAGGAAGTAA AAGCGCTTAA CCGCGAAGAA CAGCCTGTCC AGGAGACCGA GCAGGAAGAA CGCGTTCAGC AGGTTCAGCC GCGCCGCAAG CAGCGTCAGC TTAATCAGAA AGTCCGCTTT ACCAACAGCG CAGTGGTTGA AACGGTTGAC ACGCCGGTCG TCGTCGACGA ACCACGCCCG GTTGAAAACG TTGAACAGCC CGTTCCAGCG CCGCGTACCG AGCTGGCGAA AGTTGATTTA CCTGTCGTTG CCGATATCAC GCCGGAGCAG GATGATAGCG TAGAACCTCG CGATAATACC GGTATGCCGC GTCGCTCCCG CCGTTCTCCG CGCCACCTGC GCGTAAGCGG TCAGCGTCGC CGTCGCTATC GTGACGAGCG CTACCCGACA CAATCGCCGA TGCCGTTAAC CGTCGCCTGC GCGTCGCCGG AAATGGCGTC CGGTAAAGTC TGGATCCGCT ACCCGATTGT CCGTCCTCAG GAAACGCAGG TTGTTGAAGA GCAGCGTGAA GCAGATCTGG CGCTGCCACA ACCGGTTGTC GCTGAACAGC AGGTTATCGC TGCGACCGTA GCGCTCGAAC CACAAGCGTC AGTACAGGCG GTAGAAAACG TTGCCGTTGA GCCGCAAACC GTCGCCGAAC CACAGACGTC GGAAGTCGTC GAGGTCGAGA CAACGCATCC GGAAGTGATT GCCGCGCCGG TTGATGAACA GCCGCAACTG ATTGCCGAAA GCGATACGCC GGTGGCGCAA GAGGTTATTG CTGACGCCGA ACCGGTAGCA GAAACCGCCG ACGCGTCCAT TACGGTGGCT GAAAACGTAG CTGATGTTGT CGTTGTCGAG CCAGAAGAAG AGACAAAAGC GGAAGCGGCT GTTGTGGAGC ACACGACAGA AGAAACCGTT ATCGCACCGG CCCAGGTGGT GGAAAAGCCG CAGGACGTTG TCTGCGTTGA CGACGATCAT AACCACGCCA GCGCGCCGAT GACGCGTGCG CCAGCGCCGG AATATGTGCC GGAAACCCCG CACCATAGCG ACTGGCAGCG CCCTTCCTTC CACTTTGAAG GTAAAGGCGC GGCAGGCGGA CACAGCGCCA CACGTCACGC CAGCGCCCCG GCGACACGCC CACAGCCGGT AGAATGA
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Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL QWDLSFRLKH WEAIQKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVMEMA RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRTAVN AIETRQDGVR CVIVPNDQME TPHYSVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEYAE RKRPEQPALA TFAMPDVPPA PTPVEPAVSV ATAKKDNVAA AQPAQPGLFS RFLNALKQLF SGEETKAVET AAPKAEEKAE RQQDRRKPRQ NNRRDRNERR DTRDNRAGRD GGESRDDNRR NRRQTQQQNA EARDTRQQET AEKVKTGDEQ QQTPRRERSR RRNDDKRQAQ QEVKALNREE QPVQETEQEE RVQQVQPRRK QRQLNQKVRF TNSAVVETVD TPVVVDEPRP VENVEQPVPA PRTELAKVDL PVVADITPEQ DDSVEPRDNT GMPRRSRRSP RHLRVSGQRR RRYRDERYPT QSPMPLTVAC ASPEMASGKV WIRYPIVRPQ ETQVVEEQRE ADLALPQPVV AEQQVIAATV ALEPQASVQA VENVAVEPQT VAEPQTSEVV EVETTHPEVI AAPVDEQPQL IAESDTPVAQ EVIADAEPVA ETADASITVA ENVADVVVVE PEEETKAEAA VVEHTTEETV IAPAQVVEKP QDVVCVDDDH NHASAPMTRA PAPEYVPETP HHSDWQRPSF HFEGKGAAGG HSATRHASAP ATRPQPVE
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