Gene SNSL254_A1226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1226 
Symbol 
ID6485417 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp1223006 
End bp1223698 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content36% 
IMG OID642736626 
Productoligogalacturonate-specific porin 
Protein accessionYP_002040384 
Protein GI194445032 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value0.715792 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCA ACAAATATCT TCTGGGTATG GTTTCGTTTA TAGCATTTTC ATCATATCTA 
CAAGCGGCAA CCCTTGATTA TCGGCATGAA TATGCTGATA GAACCAGAAT TAATAAAGAC 
CGTATTGCTA TAATTGAAAA GCTTCCTAAC GGCATTGGTT TTTATGTCGA TGCCAGCGTT 
AAATCGGGAG GAGTAGATGG TGAGCAGGAT AAGCATTTAA GCGATCTCGT CGCAAACGCT 
ATAGAACTGG GCGTAAGTTA TAATTATAAA GTTACGGACA ATTTTGTTTT GCAGCCTGGA 
TTTATATTTG AAAGCGGTCC AGACACTTCA ATTTATAAGC CTTATTTAAG GGGGCAATAT 
AATTTTGATT CTGGTGTTTA TATGGCTGGT CGTTACCGTT ATGACTATGC AAGGAAGACA 
GCTAACTATA GTGATGATGA GAAAACGAAT AGATTTGATA CTTATATAGG TTATGTTTTT 
GATGAGTTGA AATTAGAATA TAACTTTACC TGGATGGATA GCGATCAAAT TAAATTTGAT 
AACAAAAAAA CAAACTATGA ACATAATGTG GCTTTAGCCT GGAAACTGAA TAAGTCATTT 
ACACCATACG TTGAGGTCGG AAATGTAGCG GTGAGAAATA ATACCGATGA GAGACAGACC 
CGTTATCGCG TTGGATTACA ATACCACTTT TGA
 
Protein sequence
MKINKYLLGM VSFIAFSSYL QAATLDYRHE YADRTRINKD RIAIIEKLPN GIGFYVDASV 
KSGGVDGEQD KHLSDLVANA IELGVSYNYK VTDNFVLQPG FIFESGPDTS IYKPYLRGQY 
NFDSGVYMAG RYRYDYARKT ANYSDDEKTN RFDTYIGYVF DELKLEYNFT WMDSDQIKFD 
NKKTNYEHNV ALAWKLNKSF TPYVEVGNVA VRNNTDERQT RYRVGLQYHF