Gene SNSL254_A1195 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1195 
SymbolhpaR 
ID6484049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp1189842 
End bp1190282 
Gene Length441 bp 
Protein Length146 aa 
Translation table11 
GC content53% 
IMG OID642736597 
Producthomoprotocatechuate degradation operon regulator, HpaR 
Protein accessionYP_002040355 
Protein GI194443965 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID[TIGR02337] homoprotocatechuate degradation operon regulator, HpaR 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value0.711605 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATGATT CATTAACCAT CGCCTTGCTT CAGGCGCGCG AAGCGGCAAT GACCTATTTC 
CGCCCCATCG TTAAAAGCCA CAATCTGACC GACCAGCAAT GGCGCATTGT GCGAATCCTG
GCCGATAGCC CCTCTATGGA TTTTCACGAG CTGGCCTTTC GTACCTGCAT TTTGCGTCCA
AGTCTGACCG GAATATTGAC GCGCATGGAG CGAGACGGAC TGGTGTTGCG ACTCAAGCCG
GTTAACGATC AGCGTAAGTT ATATGTCATG TTGACGGAGC AGGGACAAAC GTTGTACGCC
CGTGCCCGAA GCCAGGTAGA AGAGGCTTAT CGAAAAATTG AGGCCGATTT CACGCCCGAA
AAAACACAGC AATTGATGCT GCTGCTGGAC GATCTTATTG CTCTGGGGCG CCAGCATCCT
GATAGCGAAG CGGAAGCATA G
 
Protein sequence
MHDSLTIALL QAREAAMTYF RPIVKSHNLT DQQWRIVRIL ADSPSMDFHE LAFRTCILRP 
SLTGILTRME RDGLVLRLKP VNDQRKLYVM LTEQGQTLYA RARSQVEEAY RKIEADFTPE
KTQQLMLLLD DLIALGRQHP DSEAEA