| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1079 |
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| Symbol | |
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| ID | 6485093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 1086396 |
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| End bp | 1089482 |
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| Gene Length | 3087 bp |
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| Protein Length | 1028 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642736484 |
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| Product | gifsy-1 prophage VmtH |
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| Protein accession | YP_002040243 |
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| Protein GI | 194442929 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5281] Phage-related minor tail protein |
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| TIGRFAM ID | [TIGR01541] phage tail tape measure protein, lambda family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.497302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.0993737 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCCAGA AAGTCGGTGA TATCGTCATC AACATGGATG TTGATACAGC TAAAGTTGCC
GCCGGTCTTC AGACTGCCAG TAACGGGCTG GGGAAGCTGG TGGACAGCAG TGATCTCGTT
GAAAAACGCA TCAAGCGATG TATGGAGTCC AGCGCCAGAA GTGTGGCGGC ATCGGCAAAA
AGTATCAGTG CCGCTATGGC GCAATCACAG GTTGCCACAC GCACACAGAG TGACGCTATG
GCACAACTGG CGCGTGAGGC GAACGAGGCC AGAGAAAGGG CTGTCGACCT GAATCAGAAG
TTAAGGGCGG AAGCTGCGCA GGCAGCGGTG GTTGCACAGG CTCAGGATGC AGCCGCAGCG
GCATTTTACC GTCAGATTGA CAGTGTAAAA CAGTTAAGCG GTGGTCTGCA GGAGTTACAG
CGTATCCAGG CGCAGGTACG ACAGGCGAAA GGACGCGGAG ATATTTCACA GGGCGATTAT
CTGGCGCTGG TGTCTGAAGC TGCTGCAAAG ACACGCGAAC TTACCGATGC GGAGGCGCTG
GCCACGCAGA AAAAAGCACA GTTTATACGT CGACTGAAAG AGCAGACGGC GGTACAGGGC
CTCTCCCGTA CTGAGTTGCT GCGGGTGAAG GCGGCTGAAC TGGGGGTTAG CAGTGCCGCC
GATGTCTATA TCCGCAAACT GGATACCGCA ACAAAATCCA CTCATGCACT AGGACTGAAA
TCAGCAATGG CGCGCCGCGA GATAGGCGTA CTGATTGGTG AACTGGCACG GGGAAATTTT
GGCGCCCTTC GCGGTTCCGG TATCACGCTG GCCAACCGGG CCGGGTGGAT TGAGCAACTG
ATGTCGCCGA AGGGCATGAT GCTCGGCGGG CTGGTTGGCG GTGTGGCTGC GGCGGTTTAC
GGACTGGGTA AGGCGTACTA TGAGGGGGCG AAAGAAAGTG AGGAGTTCAA TAAACAGCTT
ATTCTGACCG GAAGTTACGC CGGAAAAACC ACAGGCAAGC TTAATGAAAT GGCGAAGTCG
CTCGCCGGAA ATGGCGTCAC GCAGCACGAC GCGGCAGGAG TACTGACCCA GGTGGTCGGT
AGCGGAGCGT TTACCGGGCA GGCAGTGGCA ATGGTATCCC GTACCGCGGC CAGAATGCAG
GAAAACGTGG GGCAGTCAGT GGATGAAACC ATCCGCCAGT TTAAACGGCT GCAGGATGAT
CCGGTGAACG CGGCGAAAGA ACTGGACAGG GCACTGCATT TTCTGACTGC CACCCAGCTT
GAACAAATCA GGGTGCTCGG TGAACAGGGA AGAACGGCTG ATGCTGCGAA AATTGCCATG
TCCGCGTATT CGGAAGAGAT GAATAAACGG GCGGGTGACG TACATGATAA TCTGGGCTGG
ATCGAGAAGG CATGGAATGC CGTGGGTGAT GCGGCGAAGT GGGCGTGGGA TCGGATGCTG
GATATCGGGC GGGAAGATAC GCTCGATGAA AAAATCGCGA CACTGCAGGA AAAAATCGCG
CGCGCCAGAA AAACGCCATG GACAGTGTCT TCCTCCCAGA CTGAATATGA TCAGCAGCAA
CTGAACGAAC TTCAGGAACA GAAACGCCAG AAGGACCTGC TGGATGCGAA GGCGCAGGCA
GAGCGTAATT ATCAGAAGAC TCAGAAGCGC CGGAACGAGC AGAACGCCGC GCTGAACCGG
GATAATGAAA CTGAATCCCT GCGGCATCAA CGGGAGGTGG CGCGCATTAC CGCCATGCAG
TATGCCGATG CAGCGGTACG CAATGCCGCG CTGGAGCGTG AAAACGAACG CCATAAAAAA
GCAATGGCAC GGCAGAAGGA AAAGCCAAAG GCTTACTACA ACGACGAGGC CGGGCGACTG
CTTTTGCAGT ACAGCCAGCA ACAGGCGCAG ACTGAAGGGC TGATTGCCGC CGCGAAGCTT
TCCACGACCG AAAAAATGAC GGAAGCGCAT AAGCAGCTTT TGTCATTTCA GCAGCGCATC
GCTGATTTGT CCGGTAAAAA ACTGACGGCG GATGAACAAA GCGTACTGGC ACATAAGGAT
GAAATAGCGC TTGCGCTACA GAAGCTGGAT ATCTCACAAC AGGATTTGCA ACACCAGAAT
GCCTTTAATG AACTGAAGAA AAAGACGCTC ACATTAACCA GCCAGCTCGC TGACGAAGAA
TCCCGCGTCA GGCAGCAGCA CGCACTGGCG CTGGCCACAA TGGGTATGGG CGATCAGCAA
CGTGGCCGGT ACGAAGAGCA TCTGAAAATT CAACAGCACT ACCAGGAACA ACTGGAGCAG
CTTAAGCGCG ACAGCAAGGC AAAAGGGACA TACGGTTCTG ACGAATACCG TCAGGCGGAG
CAGGAACTTC AGGCCAGTCT CGATCGCCGA CTGGCTGAGT GGGCGGATTA TAACGCGAAA
GTGGATGCTG CGCAGGGAGA CTGGACGCAG GGCGCGTCGC GGGCGCTGGA TAACTTTCTG
GCGCAGGGGG GCAACGTGGC AGGCATGACG GAGAACGTTT TCACAAACGC ATTTAACGGC
ATGGCGGACA GTATCGCGAA TTTTGCCGTG ACCGGAAAGG GCAGTTTCCG GAGCCTGACG
GTCTCCATCC TGGCTGACCT GGCAAAAATG GAGGCACGTA TTGCGGCTTC TAAACTGTTG
GGTTCAGTAC TGGGTATGTT CGTCTTTGGC GCATCAGCAG GCGGAAGTAC ACCATCCGGG
GCATACAGTT CAGCGGCGCT GTCGGTCATT CCAAATGCGG ACGGCGGCGT GTACCGCTCA
GCAGGACTCA GTCAGTACAG CGGCAGTATT GTTAACAGAC CGACGTTCTT TGCATTTGCC
AGAGGGGCGG CAGTAATGGG AGAGGCCGGT CCGGAGGCTA TACTGCCGCT TCGTCGCGGT
ACTGACGGTA AGCTGGGGGT TGTGGCAGCA GGTTCCGGAG GGATGGCGAT GTTTGCACCG
CAGTATCATA TTGCAATCAG CAACACGGGG CCGGAACTGA CGCCGCAGGC GCTGAAGGCG
GTTTATGATC TGGGTAAAAA GGCGGCGGCT GATTTCGTGC AGCAGCAGGG GCGTGACGGC
GGCAGGCTGA GCGGGGCATA TCGATGA
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| Protein sequence | MSQKVGDIVI NMDVDTAKVA AGLQTASNGL GKLVDSSDLV EKRIKRCMES SARSVAASAK
SISAAMAQSQ VATRTQSDAM AQLAREANEA RERAVDLNQK LRAEAAQAAV VAQAQDAAAA
AFYRQIDSVK QLSGGLQELQ RIQAQVRQAK GRGDISQGDY LALVSEAAAK TRELTDAEAL
ATQKKAQFIR RLKEQTAVQG LSRTELLRVK AAELGVSSAA DVYIRKLDTA TKSTHALGLK
SAMARREIGV LIGELARGNF GALRGSGITL ANRAGWIEQL MSPKGMMLGG LVGGVAAAVY
GLGKAYYEGA KESEEFNKQL ILTGSYAGKT TGKLNEMAKS LAGNGVTQHD AAGVLTQVVG
SGAFTGQAVA MVSRTAARMQ ENVGQSVDET IRQFKRLQDD PVNAAKELDR ALHFLTATQL
EQIRVLGEQG RTADAAKIAM SAYSEEMNKR AGDVHDNLGW IEKAWNAVGD AAKWAWDRML
DIGREDTLDE KIATLQEKIA RARKTPWTVS SSQTEYDQQQ LNELQEQKRQ KDLLDAKAQA
ERNYQKTQKR RNEQNAALNR DNETESLRHQ REVARITAMQ YADAAVRNAA LERENERHKK
AMARQKEKPK AYYNDEAGRL LLQYSQQQAQ TEGLIAAAKL STTEKMTEAH KQLLSFQQRI
ADLSGKKLTA DEQSVLAHKD EIALALQKLD ISQQDLQHQN AFNELKKKTL TLTSQLADEE
SRVRQQHALA LATMGMGDQQ RGRYEEHLKI QQHYQEQLEQ LKRDSKAKGT YGSDEYRQAE
QELQASLDRR LAEWADYNAK VDAAQGDWTQ GASRALDNFL AQGGNVAGMT ENVFTNAFNG
MADSIANFAV TGKGSFRSLT VSILADLAKM EARIAASKLL GSVLGMFVFG ASAGGSTPSG
AYSSAALSVI PNADGGVYRS AGLSQYSGSI VNRPTFFAFA RGAAVMGEAG PEAILPLRRG
TDGKLGVVAA GSGGMAMFAP QYHIAISNTG PELTPQALKA VYDLGKKAAA DFVQQQGRDG
GRLSGAYR
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