Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1038 |
Symbol | dpaL |
ID | 6482349 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 1054343 |
End bp | 1055557 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 642736444 |
Product | diaminopropionate ammonia-lyase |
Protein accession | YP_002040203 |
Protein GI | 194443204 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1171] Threonine dehydratase |
TIGRFAM ID | [TIGR01747] diaminopropionate ammonia-lyase family [TIGR03528] diaminopropionate ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.61616 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.00023872 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCATGAGC TTATTAAATA TCAGTTTAAT ACACGTCGGA AAAAATATGG TACAGGAGCG GCCTTAAGTT TGCTTAACGG AAATGTTGGG CATGAGGTGT TAGCATTTCA TAAAAAATTA CCCAATTATG CCGTTACGCC GTTACATAAT CTGGCGCATC TAAGCCGGCG GCTTGGACTA GGGTCCATCC ATATTAAAGA TGAATCCTGG CGTTTTGGCC TGAATGCTTT TAAAGGTCTG GGCGGCTCTT ATGCTGTAGG AAAATATCTC GCTGATAAAT TGCAATGTGA TATTAACTCG TTAAGTTTTG CTGCCCTTAA TACTCCTGAG ATTAAAGAAA AAATTAAAGA TTGTGTTTTT GTTACCGCGA CGGATGGCAA TCATGGCCGT GGTGTGGCGT GGGCGGCAGA GCAATTAGGT CTAAAAGCCG TCGTTTATAT GCCTAAAGGA TCATCGTTAA TCCGGGCAGA GAATATTCGC CATCATGGAG CTGAATGCAC CATCACCGAT CTGAACTACG ATGATGCAGT GCGACTGGCC CATAGAATGG CGCAAACAAA AGGCTGGGTG CTTTTGCAGG ATACAGCCTG GACAGGGTAT GAAGAGATCC CAACATGGAT TATGCAAGGC TATATGACAC TAGCGGTTGA AGCTTATGAG CAGCTCGCAG AAACAAACAG TCCGTTGCCA ACCCACCTTA TTTTACAAGC GGGGGTGGGA TCGTTTGCTG GCAGTGTTAT GGGTTATTTT GTTGAAAAAA TGCAGGAAAA TATCCCTAAT ATTATTGTGG TTGAGCCGCA TCAGGCCAAC TGTCTTTATC AATCCGCAGT TATGAATGAT GGTCAACCTC ACTGCGTCAC TGGCGATATG GCGACGATAA TGGCCGGGCT TGCGTGTGGG GAGCCGAATA TTATCAGTTG GCCTATTATT CGGGACAACA CCAGTTGTTT TATTTCCGCT GATGATTGTC TGGCGGCTAA GGGTATGCGC ATTTCTGCCG CGCCGCGTCC AGGCACTGAT ACGCCTTTTA TTTCCGGCGA GTCCGGAGCT ATTGGCGTAG GGTTACTTTA TGAGTTGATG AACAATATGC ATTATCAGGA TCTTGCTAAT CGCTTACAGC TTGATGCCAA TGCTCATGTT TTGCTTATTA GCACCGAAGG CGATACGTCC CCAGATATTT ATGAAGATAT AGTCTGGAAC GGACGCAGTG CTTAA
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Protein sequence | MHELIKYQFN TRRKKYGTGA ALSLLNGNVG HEVLAFHKKL PNYAVTPLHN LAHLSRRLGL GSIHIKDESW RFGLNAFKGL GGSYAVGKYL ADKLQCDINS LSFAALNTPE IKEKIKDCVF VTATDGNHGR GVAWAAEQLG LKAVVYMPKG SSLIRAENIR HHGAECTITD LNYDDAVRLA HRMAQTKGWV LLQDTAWTGY EEIPTWIMQG YMTLAVEAYE QLAETNSPLP THLILQAGVG SFAGSVMGYF VEKMQENIPN IIVVEPHQAN CLYQSAVMND GQPHCVTGDM ATIMAGLACG EPNIISWPII RDNTSCFISA DDCLAAKGMR ISAAPRPGTD TPFISGESGA IGVGLLYELM NNMHYQDLAN RLQLDANAHV LLISTEGDTS PDIYEDIVWN GRSA
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