Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1017 |
Symbol | msbA |
ID | 6485281 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 1030914 |
End bp | 1032662 |
Gene Length | 1749 bp |
Protein Length | 582 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642736423 |
Product | lipid transporter ATP-binding/permease protein |
Protein accession | YP_002040182 |
Protein GI | 194443714 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 64 |
Fosmid unclonability p-value | 0.71873 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATAACG ATAAAGATCT CTCTACGTGG CAGACCTTCC GCCGACTGTG GCCAACCATA GCGCCTTTTA AAGCAGGTCT GATCGTGGCG GGCATAGCGT TAATTCTCAA CGCAGCCAGC GATACCTTCA TGCTATCGCT CCTCAAGCCA TTACTGGATG ATGGTTTCGG TAAAACGGAT CGCTCAGTGT TGCTGTGGAT GCCGCTGGTG GTTATTGGGC TGATGATATT ACGAGGCATC ACTAGCTATA TCTCCAGCTA CTGTATTTCA TGGGTGTCAG GCAAGGTGGT AATGACCATG CGCCGTCGCC TGTTTGGCCA TATGATGGGA ATGCCCGTCG CCTTCTTTGA TAAACAGTCT ACCGGTACGC TGCTGTCGCG TATTACATAC GATTCAGAAC AGGTTGCCTC TTCTTCATCT GGCGCGCTGA TTACCGTGGT GCGTGAAGGG GCATCGATCA TCGGATTGTT TATCATGATG TTCTATTACA GCTGGCAGTT GTCGATCATC CTGGTTGTTT TAGCGCCGAT TGTGTCGATT GCGATTCGCG TTGTCTCAAA GCGGTTCCGC AGCATCAGTA AAAATATGCA GAACACGATG GGACAAGTGA CTACCAGCGC TGAACAAATG CTGAAAGGAC ACAAAGAGGT ACTGATTTTT GGCGGTCAGG AAGTCGAAAC TAAGCGCTTT GATAAAGTCA GCAATAAGAT GCGACTGCAA GGCATGAAAA TGGTCTCTGC CTCGTCAATT TCCGATCCTA TCATTCAGCT CATTGCCTCG CTGGCGCTGG CGTTTGTCCT CTATGCTGCG AGCTTCCCAA GCGTAATGGA TAGCCTGACG GCTGGGACCA TCACCGTGGT GTTCTCCTCC ATGATCGCGC TGATGCGTCC ATTAAAATCG CTGACAAACG TTAACGCGCA GTTCCAGCGT GGGATGGCGG CTTGTCAAAC GTTGTTTGCG ATTCTGGATA GCGAACAGGA GAAAGATGAA GGTAAACGTG TCATTGACCG CGCGACCGGC GATCTCGAAT TCCGCAATGT GACGTTTACT TACCCGGGCC GTGAAGTGCC GGCATTGCGT AACATCAATT TGAAAATTCC TGCCGGGAAA ACCGTGGCGC TGGTGGGGCG TTCCGGATCG GGTAAATCAA CTATCGCCAG TCTGATCACC CGTTTCTACG ATATTGATGA AGGACACATC CTGATGGATG GTCACGATCT ACGCGAATAC ACTCTGGCCT CTCTACGTAA TCAGGTGGCG CTGGTTTCGC AAAACGTGCA TCTGTTTAAC GACACGGTCG CCAATAACAT TGCTTATGCC CGGACGGAAG AATACAGCCG CGAGCAGATT GAAGAGGCGG CGCGCATGGC CTATGCCATG GACTTTATCA ATAAGATGGA TAATGGCCTG GATACCATTA TCGGCGAAAA CGGCGTACTG CTTTCCGGCG GTCAGCGCCA GCGTATCGCG ATCGCCCGCG CCTTACTGCG CGACAGCCCG ATTCTGATCC TTGATGAAGC TACGTCCGCG CTGGATACCG AATCTGAACG TGCGATTCAG GCAGCGTTGG ATGAGCTGCA GAAAAACCGT ACCTCTCTGG TGATTGCGCA CCGTCTCTCC ACCATCGAAC AGGCAGATGA GATCGTTGTA GTCGAAGACG GTATTATCGT TGAGCGCGGC ACTCATAGCG AGTTGCTGGC GCAACACGGC GTTTACGCCC AGCTACATAA GATGCAATTT GGCCAATGA
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Protein sequence | MHNDKDLSTW QTFRRLWPTI APFKAGLIVA GIALILNAAS DTFMLSLLKP LLDDGFGKTD RSVLLWMPLV VIGLMILRGI TSYISSYCIS WVSGKVVMTM RRRLFGHMMG MPVAFFDKQS TGTLLSRITY DSEQVASSSS GALITVVREG ASIIGLFIMM FYYSWQLSII LVVLAPIVSI AIRVVSKRFR SISKNMQNTM GQVTTSAEQM LKGHKEVLIF GGQEVETKRF DKVSNKMRLQ GMKMVSASSI SDPIIQLIAS LALAFVLYAA SFPSVMDSLT AGTITVVFSS MIALMRPLKS LTNVNAQFQR GMAACQTLFA ILDSEQEKDE GKRVIDRATG DLEFRNVTFT YPGREVPALR NINLKIPAGK TVALVGRSGS GKSTIASLIT RFYDIDEGHI LMDGHDLREY TLASLRNQVA LVSQNVHLFN DTVANNIAYA RTEEYSREQI EEAARMAYAM DFINKMDNGL DTIIGENGVL LSGGQRQRIA IARALLRDSP ILILDEATSA LDTESERAIQ AALDELQKNR TSLVIAHRLS TIEQADEIVV VEDGIIVERG THSELLAQHG VYAQLHKMQF GQ
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